Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060311.seq
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.93 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   0.93 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 77  LNSVIKKCPVLTLTQFTLKNSRMNSEK 157
           LN  IKK P+  +  FT+   ++N  +
Sbjct: 266 LNLTIKKMPIAIVAPFTIVEPKLNKHE 292


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 77  LNSVIKKCPVLTLTQFTLKNSRMNSEK 157
           LN  IKK P+  +  FT+   ++N  +
Sbjct: 158 LNLTIKKMPIAIVAPFTIVEPKLNKHE 184


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 177 KYASAVRAHRDARRRLFTLLRPQMTKTAVIAQKVVSEHNSW 299
           KY    +A  DA+ R  ++ + + + T    Q   S++ SW
Sbjct: 195 KYNPFAKAFLDAKERPDSIYQREYSPTFTQQQTQYSQYGSW 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,186
Number of Sequences: 336
Number of extensions: 2801
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)