Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060311.seq
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...    72   6e-14
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   1.7  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   1.7  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   2.3  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   4.0  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   7.0  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   7.0  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 34/73 (46%), Positives = 47/73 (64%)
 Frame = +1

Query: 283 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 462
           +  + GI+EVNM KEDG VI+F  P   +SL   T AI G  E K  +E+LPGIL+ LGP
Sbjct: 50  MQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGP 109

Query: 463 DGLNRLKRIASSV 501
           + L  L+++A  +
Sbjct: 110 ESLTALRQMAEQL 122



 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 23/39 (58%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = +2

Query: 143 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDK 253
           M+  KL KLQ+  RIGGKGTPRRK K    +A  A DDK
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDK 39


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 80  NSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGG-KGTPRRKKKV 223
           NSV++K         +  NSR+NS    +  S V + G  G+P  K+K+
Sbjct: 131 NSVVEKISQKNQEARSRANSRVNSRANSRANSSVSLAGMDGSPNWKRKM 179


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
 Frame = +1

Query: 337 VIHFNNPKAQASLAANT------FAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASS 498
           V ++ NP A +  A N          T   E   T     G +SQ GPDG  + +   + 
Sbjct: 216 VSNYYNPSATSKPAVNVQPPRIPTKATPSAEPSMTASANAGSISQAGPDGEYQGREQIAP 275

Query: 499 VAALSHSRKTT 531
           V+    +RKTT
Sbjct: 276 VSDTEAARKTT 286


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 439 GILSQLGPDGLNRLKRIASSVAALSHSRKTTRYLTSSATLT 561
           G +S+L  DG +R +   SS ++ SHS++TT+   S+   T
Sbjct: 530 GQISKLYIDGKHRCEAAISSHSSESHSKRTTQQPKSTPNHT 570


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 350 LKCITVPSSLIIFTSSMPGIVFTDNFLSDDCSFCHLWPQ*REQPSSCVSVCPYR 189
           L  ++  ++L I+ +  PG + T   L ++ +     P   EQP+ CV+ CP R
Sbjct: 128 LAAVSADATLRIYEAMEPGNL-TYWTLMNEIALMPSPPSRNEQPAFCVNWCPSR 180


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 131 KNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 223
           K  +   +KLKK   ++++    T +RK+KV
Sbjct: 148 KEKKEKKDKLKKKSKRLKLDDSHTQKRKRKV 178


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 394 ITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAALSHSRKTTRYLTSSATLT 561
           ++ HGE++   E   G  S L P GL     +   VA  S   K     TSS   T
Sbjct: 211 LSRHGESQFNVEGKIGGDSSLSPQGLKYAALLPEYVAKFSIGEKGLTVWTSSMART 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,249,421
Number of Sequences: 5004
Number of extensions: 44229
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)