Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060311.seq
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 86 3e-17
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 84 8e-17
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 50 2e-06
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 29 2.4
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567... 28 7.2
05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790 27 9.6
05_03_0564 - 15502458-15503303,15503394-15503474,15503572-155036... 27 9.6
05_03_0563 - 15493570-15494415,15494506-15494586,15494684-154947... 27 9.6
05_03_0562 - 15484733-15485578,15485669-15485749,15485847-154858... 27 9.6
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 85.8 bits (203), Expect = 3e-17
Identities = 39/70 (55%), Positives = 54/70 (77%)
Frame = +1
Query: 283 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 462
VNTIPGIEEVN+ K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGP
Sbjct: 49 VNTIPGIEEVNIFKDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGP 107
Query: 463 DGLNRLKRIA 492
D L+ L+R+A
Sbjct: 108 DNLDNLRRLA 117
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +2
Query: 143 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDK 253
MN +KLKK+ VR GGKG+ RRKKK VH T TDDK
Sbjct: 2 MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDK 38
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 84.2 bits (199), Expect = 8e-17
Identities = 38/70 (54%), Positives = 53/70 (75%)
Frame = +1
Query: 283 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 462
VN IPGIEEVN+ K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGP
Sbjct: 488 VNNIPGIEEVNIFKDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGP 546
Query: 463 DGLNRLKRIA 492
D L+ L+R+A
Sbjct: 547 DNLDNLRRLA 556
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +2
Query: 143 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDK 253
MN +KLKK+ VR GGKG+ RRKKK VH T TDDK
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDK 477
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/73 (43%), Positives = 41/73 (56%)
Frame = +1
Query: 283 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 462
VNTIP IEEVN+ K+D VI F NPK + ++LPGI++QLGP
Sbjct: 40 VNTIPAIEEVNIFKDD-LVIQFVNPK-------------------ELQDVLPGIINQLGP 79
Query: 463 DGLNRLKRIASSV 501
D + LKRIA +
Sbjct: 80 DNMEHLKRIAEEM 92
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = +2
Query: 179 VRIGGKGTPRRKKKVVHVTAATDDK 253
VR GGKGT RRKKK VH T TDDK
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDK 29
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 473 FKPSGPSWLRIPGSISVVCLFSPCPVIANVFAAS 372
F P GP W + PGS + +PCP A++F++S
Sbjct: 207 FYPLGPVW-QPPGSSTSKAPSAPCPPSASLFSSS 239
>12_01_0667 +
5674322-5674393,5674455-5675159,5676051-5676087,
5676238-5676335,5676452-5676475
Length = 311
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 80 NSVIKK-CPVLTLTQFTLKNSRMNSEKLKKLQS--QVRIGGKGTPRRKKKVVHVTAAT 244
++V+++ C + + + LK E+LKKL + R GG G P R K +H+ +A+
Sbjct: 241 DAVVQRFCQEVGVKRRVLKYGSGAPEELKKLDFFWERRGGGGGNPLRNKMKIHLASAS 298
>05_05_0342 - 24231924-24232178,24232271-24232653,24232778-24232790
Length = 216
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 77 LNSVIKKCPVLTLTQFTLKN--SRMNSEKLKKLQSQVRI-GGKGTPRRKKKVVHVTAATD 247
L + K V +LT ++K S M + +KL+++ GK P +KKK +HV A
Sbjct: 140 LMKAMNKLAVASLTSTSVKEIVSSMTTVANEKLKAEKAADAGKKKPGQKKKRLHVNKAEG 199
Query: 248 DK 253
K
Sbjct: 200 QK 201
>05_03_0564 -
15502458-15503303,15503394-15503474,15503572-15503620,
15503786-15503828,15504576-15504633,15504720-15504858,
15504980-15505107
Length = 447
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 504 RAKPLEEDDEVPNLVGNFDEA 566
R +P++ DDE NLV NF EA
Sbjct: 194 RNRPMQGDDEAYNLVLNFKEA 214
>05_03_0563 -
15493570-15494415,15494506-15494586,15494684-15494732,
15494898-15494940,15495688-15495745,15495832-15495970,
15496092-15496219
Length = 447
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 504 RAKPLEEDDEVPNLVGNFDEA 566
R +P++ DDE NLV NF EA
Sbjct: 194 RNRPMQGDDEAYNLVLNFKEA 214
>05_03_0562 -
15484733-15485578,15485669-15485749,15485847-15485895,
15486061-15486103,15486851-15486908,15486995-15487133,
15487255-15487382
Length = 447
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 504 RAKPLEEDDEVPNLVGNFDEA 566
R +P++ DDE NLV NF EA
Sbjct: 194 RNRPMQGDDEAYNLVLNFKEA 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,000,642
Number of Sequences: 37544
Number of extensions: 310527
Number of successful extensions: 847
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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