Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060311.seq
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)                   60   2e-09
SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)          31   0.60 
SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    30   1.8  
SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)                    29   3.2  
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)                     28   5.6  
SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_9548| Best HMM Match : WD40 (HMM E-Value=0.16)                      28   7.4  
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)                      28   7.4  
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_331| Best HMM Match : F5_F8_type_C (HMM E-Value=0.034)              27   9.8  
SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_59530| Best HMM Match : NAC (HMM E-Value=4.6e-05)
          Length = 98

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +1

Query: 283 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAA 381
           VN IPGIEEVNMIKEDGTVIHFNNPKA+    A
Sbjct: 54  VNPIPGIEEVNMIKEDGTVIHFNNPKAEMGSGA 86


>SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)
          Length = 486

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +3

Query: 216 RRLFTLLRPQMTKTAVIAQKVVSEHNSWHRRGKYDQRGRYCDTL*QPEGTSVAGREHVR 392
           R + T +RP   KT ++A+ V   H+  H+  +  QR RY      P GT+   R H R
Sbjct: 47  RTVNTHIRPARHKTYIMARTVKHAHHDTHKTTRTSQRARY-----NPRGTACTLR-HTR 99


>SB_26449| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +3

Query: 519 EEDDEVPNLVGNFDEAS 569
           +EDDEVP LV NFDE S
Sbjct: 10  DEDDEVPELVENFDEPS 26


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 153  KN*RNSSRKYASAVRAHRDARRRLFTLLRPQMTKTAV-IAQKVVSEHNSWHR 305
            K  R   R+Y    R  R  +RR+   LR + TKTAV   QK V     W R
Sbjct: 1495 KRQRRKQRRYQHRRRLIRRLKRRVLRRLRRRYTKTAVYFIQKGVKHAVYWSR 1546


>SB_57498| Best HMM Match : Gene66 (HMM E-Value=7.7)
          Length = 335

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 123 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 25
           NC+    GH   T++ +Y   +YE SM + R H
Sbjct: 139 NCLWTLFGHTLRTVYRHYSDTRYELSMDVIRTH 171



 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 123 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMHVF*T 13
           NC+    GH   T++  Y   +YE SM + R H   T
Sbjct: 244 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTHTLRT 280



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 123 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 25
           NC+    GH   T++  Y   +YE SM + R H
Sbjct: 10  NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 42



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 123 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 25
           NC+    GH   T++  Y   +YE SM + R H
Sbjct: 45  NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 77



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 123 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 25
           NC+    GH   T++  Y   +YE SM + R H
Sbjct: 80  NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 112



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 123 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 25
           NC+    GH   T++  Y   +YE SM + R H
Sbjct: 209 NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 241



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 123 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 25
           NC+    GH   T++  Y    YE SM + R H
Sbjct: 174 NCLWTLFGHTLRTVYGRYSDTHYELSMDVIRTH 206


>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1488

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 212 CVSVCP-YRRCVLATGVSLIFRCSFCC 135
           C S+C  Y RCV+   V++   CS  C
Sbjct: 639 CTSICHRYGRCVMLANVTMFCNCSRAC 665


>SB_26228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 465 RLEPTEKDCVECCRAKPLEEDDEV 536
           R +P +  CV C    PLE+D+EV
Sbjct: 134 RYDPVQCACVPCYPLVPLEDDEEV 157


>SB_9548| Best HMM Match : WD40 (HMM E-Value=0.16)
          Length = 417

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 429 DAPGYPQPARTRRLEPTEKDCVECCRAKPLEEDDEVPNLVGNFDEA 566
           D  G P P+  +RL P     V   R  P     E+P L+   + A
Sbjct: 104 DVDGNPHPSHVQRLVPGHGSNVRTARQPPTTPRAELPPLLAEIEAA 149


>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
          Length = 554

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 123 NCVNVKTGHFFMTLFSYYKTRQYEFSM*LDRMH 25
           NC+    GH   T++  Y   +YE SM + R H
Sbjct: 58  NCLWTLFGHTLRTVYGRYSDTRYELSMDVIRTH 90


>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 355 PKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 462
           P     L ANT  ITG G++ +  ++ P I+  LGP
Sbjct: 248 PMRYPDLCANTLFITGKGQHHRQIKLQP-IVRALGP 282


>SB_331| Best HMM Match : F5_F8_type_C (HMM E-Value=0.034)
          Length = 302

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 228 TLLRPQMTKTAVIAQKVVSEHNSWHRRGKYDQRGRY 335
           T +RP   KT ++A+ V   H+  H   +  +R RY
Sbjct: 105 TNIRPARYKTYIMARTVKHAHHDTHNATRTSRRARY 140


>SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 89  IKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPR 208
           I   P+L  T+F+ +N+++  EK    Q+ V  G +  P+
Sbjct: 73  IDNLPILLFTRFSCRNTQVREEKNLTSQNCVESGNEKIPK 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,829,225
Number of Sequences: 59808
Number of extensions: 370950
Number of successful extensions: 1006
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)