Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060311.seq
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29488-6|AAA68776.1| 161|Caenorhabditis elegans Inhibitor of ce... 117 8e-27
U88167-2|AAB42225.3| 908|Caenorhabditis elegans Hypothetical pr... 34 0.099
Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical pr... 31 0.53
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 29 2.1
Z73898-2|CAC42388.1| 667|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z73898-1|CAC42389.1| 647|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF497835-1|AAM18113.1| 647|Caenorhabditis elegans putative Na-H... 27 8.6
AF497834-1|AAM18112.1| 667|Caenorhabditis elegans putative Na-H... 27 8.6
AF016439-5|AAB65900.1| 630|Caenorhabditis elegans Hypothetical ... 27 8.6
>U29488-6|AAA68776.1| 161|Caenorhabditis elegans Inhibitor of cell
death protein 1 protein.
Length = 161
Score = 117 bits (281), Expect = 8e-27
Identities = 53/81 (65%), Positives = 64/81 (79%)
Frame = +1
Query: 283 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 462
V IPGIEEVNMIK+DGTVIHFNNPK Q S+ ANTF++TG +NKQ TEMLPGIL+QLGP
Sbjct: 55 VTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGP 114
Query: 463 DGLNRLKRIASSVAALSHSRK 525
+ L LK++A++V L K
Sbjct: 115 ESLTHLKKLANNVTKLGPDGK 135
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/50 (60%), Positives = 37/50 (74%), Gaps = 3/50 (6%)
Frame = +2
Query: 134 NSRMNSEKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDDKNCSHRSK 274
+S+ +E++KKLQ+Q VRIGGKGTPRRKKKV+H TAA DDK K
Sbjct: 2 DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLK 51
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 522 EDDEVPNLVGNFDEAS 569
ED++VP LVG+FD AS
Sbjct: 137 EDEDVPELVGDFDAAS 152
>U88167-2|AAB42225.3| 908|Caenorhabditis elegans Hypothetical
protein D2092.5 protein.
Length = 908
Score = 33.9 bits (74), Expect = 0.099
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -2
Query: 536 YLVVFLEWLSAATLDAILFSRFKPSGPSWLRIPGSI-SVVCLFSPC-PVIANVFAASDAC 363
Y+ + + WL +LDA+ RF+ P+WL I + S+ C IAN AA +
Sbjct: 42 YVRIVVTWLGMVSLDAMTGFRFELLWPTWLMIRAAAESIQMRNQHCVTTIANPTAARFSV 101
Query: 362 AFGLLKCITVPSSLIIF 312
F C+T S LI +
Sbjct: 102 LF---ICVTATSDLICY 115
>Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical
protein T02E1.2 protein.
Length = 568
Score = 31.5 bits (68), Expect = 0.53
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Frame = -2
Query: 548 DEVRYLVVFLEWLSAATLDAILFS-------RFKPSG--PSWL-RIPGSISVVCLFSPCP 399
++VR+LV FL WL A T D I+ + FKP PSW R+ IS+ C
Sbjct: 145 EDVRFLVKFLRWL-AGTFDPIVENFKVFDSWSFKPCSLPPSWADRLTVFISMHPDMEYCN 203
Query: 398 VIANVFAASDAC-AFGLLKCITVPSSLIIFTSSMPGIVFTDNFLSD 264
+ A + +FG L V +L S + FTD FL+D
Sbjct: 204 CEQCIRIARNCKESFGPLSFRMVEDALRDQNISYGALTFTDAFLAD 249
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 243 QMTKTAVIAQKVVSEHNSWHRRGKYDQRGR 332
Q ++I+ V + H++WH G D RGR
Sbjct: 29 QTKSKSIISGDVNAHHSAWHSEGSEDTRGR 58
>Z73898-2|CAC42388.1| 667|Caenorhabditis elegans Hypothetical
protein ZK822.3b protein.
Length = 667
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 548 DEVRYLVVFLEWLSAATLDAILFSRFKP 465
D+V ++ V WL A+L ILF+ KP
Sbjct: 36 DDVHHVYVITVWLLIASLAKILFNLMKP 63
>Z73898-1|CAC42389.1| 647|Caenorhabditis elegans Hypothetical
protein ZK822.3a protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 548 DEVRYLVVFLEWLSAATLDAILFSRFKP 465
D+V ++ V WL A+L ILF+ KP
Sbjct: 16 DDVHHVYVITVWLLIASLAKILFNLMKP 43
>AF497835-1|AAM18113.1| 647|Caenorhabditis elegans putative Na-H
exchanger isoform 9b protein.
Length = 647
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 548 DEVRYLVVFLEWLSAATLDAILFSRFKP 465
D+V ++ V WL A+L ILF+ KP
Sbjct: 16 DDVHHVYVITVWLLIASLAKILFNLMKP 43
>AF497834-1|AAM18112.1| 667|Caenorhabditis elegans putative Na-H
exchanger isoform 9a protein.
Length = 667
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 548 DEVRYLVVFLEWLSAATLDAILFSRFKP 465
D+V ++ V WL A+L ILF+ KP
Sbjct: 36 DDVHHVYVITVWLLIASLAKILFNLMKP 63
>AF016439-5|AAB65900.1| 630|Caenorhabditis elegans Hypothetical
protein R02F11.4 protein.
Length = 630
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 325 EDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVA 504
ED + ++ +A +SLA +TF +G +N++ + G L N K A+ +
Sbjct: 18 EDDDKENLDDSRANSSLANSTFVTSGRIQNEKADVEVDGTLDLANLSLTNLEKSFAAEYS 77
Query: 505 ALSH 516
+ H
Sbjct: 78 EVKH 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,779
Number of Sequences: 27780
Number of extensions: 272796
Number of successful extensions: 754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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