Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060311.seq
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 400 GHGENKQTTEMLP 438
           G+G NK+T  MLP
Sbjct: 58  GYGSNKKTRHMLP 70


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 459 SELAEDTREHLCGLLILPVSGNR 391
           +++   T+EH+CG+  +P S  R
Sbjct: 531 TDVIPGTQEHVCGVKGIPCSWGR 553


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 18  KTRAYDQVTWKTRTVASCNN 77
           KTR   + +W TR    CNN
Sbjct: 346 KTRIIGRRSWVTRESQICNN 365


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 253 FVICGRSNVNNLLLASRCA 197
           F I G +NVNNL+  +RCA
Sbjct: 401 FRILG-ANVNNLIKNTRCA 418


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 502 QHSTQSFSVGSSRRVRAG*GYPG 434
           Q++  ++ +G+  RVR G  YPG
Sbjct: 349 QNNVPNWVMGNHDRVRVGTRYPG 371


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 253 FVICGRSNVNNLLLASRCA 197
           F I G +NVN+L+  SRCA
Sbjct: 398 FQILG-ANVNDLIRNSRCA 415


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 253 FVICGRSNVNNLLLASRCA 197
           F I G +NVN+L++ +RCA
Sbjct: 567 FRILG-ANVNDLIMNTRCA 584


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 433 LPGILSQLGPDGLNRLKRIASSVAALSHSRKTTRYLTSSATLT 561
           +PG L Q+G   L+      S  A ++ +  TT   T++A  T
Sbjct: 82  VPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAAT 124


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 449 LRIPGSISVVCLFSP 405
           + +  S+++ CLFSP
Sbjct: 886 ISLSASVTIACLFSP 900


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,534
Number of Sequences: 438
Number of extensions: 3286
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)