Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060311.seq
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73230.1 68414.m08475 nascent polypeptide-associated complex ...    83   1e-16
At1g17880.1 68414.m02212 nascent polypeptide-associated complex ...    83   2e-16
At2g43110.1 68415.m05352 expressed protein                             33   0.21 
At5g47690.1 68418.m05887 expressed protein                             32   0.37 
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f...    28   6.1  
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-...    28   6.1  

>At1g73230.1 68414.m08475 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain
          Length = 165

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 39/70 (55%), Positives = 54/70 (77%)
 Frame = +1

Query: 283 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 462
           VN+IP IEEVN+ K+D  VI F NPK QAS+AANT+ ++G  + K+  ++LP I+SQLGP
Sbjct: 48  VNSIPAIEEVNIFKDD-VVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGP 106

Query: 463 DGLNRLKRIA 492
           D L+ LK++A
Sbjct: 107 DNLDNLKKLA 116



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 25/37 (67%), Positives = 27/37 (72%)
 Frame = +2

Query: 143 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDK 253
           MN EKL K+ + VR GGKGT RRKKK VH T  TDDK
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDK 37


>At1g17880.1 68414.m02212 nascent polypeptide-associated complex
           (NAC) domain-containing protein / BTF3b-like
           transcription factor, putative similar to SP|P20290
           Transcription factor BTF3 (RNA polymerase B
           transcription factor 3) {Homo sapiens}; contains Pfam
           profile PF01849: NAC domain; identical to cDNA
           BTF3b-like factor GI:5912423
          Length = 165

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/70 (54%), Positives = 54/70 (77%)
 Frame = +1

Query: 283 VNTIPGIEEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGP 462
           VN+IP IEEVN+ K+D  VI F NPK QAS+AANT+ ++G  + K+  ++LP I+SQLGP
Sbjct: 48  VNSIPAIEEVNIFKDD-VVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGP 106

Query: 463 DGLNRLKRIA 492
           D ++ LK++A
Sbjct: 107 DNMDNLKKLA 116



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/37 (67%), Positives = 27/37 (72%)
 Frame = +2

Query: 143 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDK 253
           MN EKL K+ + VR GGKGT RRKKK VH T  TDDK
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDK 37


>At2g43110.1 68415.m05352 expressed protein 
          Length = 288

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +2

Query: 77  LNSVIKKCPVLTLTQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA 238
           L+S+ K+CP + L    LK      E++  L+ +V IG  GTP R KK+V + A
Sbjct: 172 LHSLTKQCPAVKLFSKHLKVE----EQVSLLKKRVNIGS-GTPNRIKKLVDIEA 220


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -1

Query: 480 QSVQAVGSELAEDTREHLCGLLILPVSGNRERVR-GQRRLCLRVVK 346
           Q++  V  E +ED +EHL  +L+  +  NR  VR   RRL ++V++
Sbjct: 172 QNIMIVLLEESEDVQEHLLLILLSKLGRNRSDVRDAARRLAMKVIE 217


>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
           family protein similar to pVHL-interacting
           deubiquitinating enzyme 1 type II [Homo sapiens]
           GI:18698435; contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 974

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 355 PKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSVAALSHSRKTTR 534
           P+   S +         G N  + +   G LSQL P GL     + SS   LS SR++ +
Sbjct: 85  PRVSGSSSNPNSGSVRSGPNSGSVKKFSGPLSQLQPTGLITSGSLGSSGPILSGSRRSGQ 144

Query: 535 --YLTSSATLTKPQ 570
             +  S+   +KP+
Sbjct: 145 LDHQLSNLASSKPK 158


>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
           / HD-ZIP transcription factor 13 identical to homeobox
           gene 13 protein (GP:12325190) [Arabidopsis thaliana]
          Length = 294

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 116 TQFTLKNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 223
           +Q   K  R+N E++K L+    +G K  P RK ++
Sbjct: 80  SQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQL 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,936,749
Number of Sequences: 28952
Number of extensions: 241264
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)