Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060310.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   1.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   7.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.4  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 124 DIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVL 246
           DI+T +ELA  T     +++  +S   AR+  +I +  T L
Sbjct: 246 DIYTREELAQRTKLTEARIQVWFSNRRARLRKQITSAATPL 286


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 566 ALRDASGATFAPHPRAQAAALSGT 637
           ALR ASG T A   R   A  +GT
Sbjct: 905 ALRPASGGTTARVVRCVCAGSTGT 928


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 360 YQKTESVIKTTAEKTSSIIGGITAG 434
           + KTE  +  T +KT+S+   +  G
Sbjct: 316 HNKTEIFLNITGDKTNSVFEHVKLG 340


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 376 DSVFWYTWL 350
           DS+ W+TW+
Sbjct: 471 DSLLWHTWM 479


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 164 SGVRPANSSGVCMSPATPVPDIASS 90
           S   P +SSG+    A P P   SS
Sbjct: 17  SAATPISSSGMTSPAAAPPPATTSS 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,409
Number of Sequences: 336
Number of extensions: 2574
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)