Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060310.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    29   0.83 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    28   1.4  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    26   4.4  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.8  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   7.7  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   7.7  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    25   7.7  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 434 RVQQARSDAQLGVFPLHRRTRRFGLENVKGKVASRSNSTQSFDEALRDAS 583
           R++  RS +    +P+   +  FG  N+K  V S+   T  FD+ALR  S
Sbjct: 586 RLRYVRSKSPTPYYPIE--SSEFGFTNLKD-VTSKDEITDGFDKALRSNS 632


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 297 VWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQM 458
           +++++ E  N+G +++  S ++  T  + +   EK +  IG     +SSKL  M
Sbjct: 171 LYQDLKELYNEGFRSISVSLMHSYTYPLHEEVVEKIAKRIGFTDISLSSKLTPM 224


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 100 MSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIAT 231
           ++G G++    T  ELA L P    +L  E+ + L   E++I T
Sbjct: 88  LTGAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVT 131


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 473 FPLHRRTRRFGLENVKGKVASRSNSTQSFDEALRDASGATFAPHPRAQAAALSGTLS 643
           FP H R+RRF L+N    +A+  +  +        +SG  F+   +A  + L  T S
Sbjct: 154 FPHHPRSRRFSLKN--AAIATSYHKFKPLSSNSLSSSGMHFSASKQAFNSPLLQTFS 208


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 348 ESQVYQKTESVIKTTAEKTSSIIGGITAGVSSK 446
           ES V+ K E++ +  + +T  +  GIT  +SSK
Sbjct: 806 ESFVFNKLEAMAQLPSPRTPVLDAGITQALSSK 838


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 319 SSVISFHTVMPSLRFKSEL*RICFAVQFSKSRFHLRHGLARDSIQRVTG 173
           ++ I + T+ PSL  KS L  IC  + +   R  +     R SI+   G
Sbjct: 824 AAAIDYETINPSLSDKSRLIEICNGINY---RHRMAQMAGRASIEYYVG 869


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 291 CQVYVLSPSFDGFALQY 241
           C+  VLSP+FDG  ++Y
Sbjct: 321 CRYLVLSPAFDGATVKY 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,570
Number of Sequences: 5004
Number of extensions: 45836
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)