Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060310.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611...    31   1.1  
03_06_0318 + 33103467-33104232,33104332-33105548                       31   1.1  
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869...    30   1.5  
02_01_0286 + 1921049-1921726                                           29   2.6  
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773           29   3.4  
08_02_1364 - 26415278-26415319,26415399-26415518,26415739-264158...    29   4.5  
04_01_0283 + 3768732-3768792,3769235-3769876,3769907-3770076,377...    29   4.5  
01_01_0921 + 7275019-7275363,7275422-7276147,7276289-7276346,727...    28   6.0  

>12_02_0709 -
           22359705-22360292,22360396-22360560,22360650-22361157,
           22361159-22361577,22362261-22362722,22362853-22364415
          Length = 1234

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 30/139 (21%), Positives = 61/139 (43%)
 Frame = +2

Query: 158 HPSRQTSYALNGVAS*PVSKMKSRL*ELYCKANPSKLGLKT*TWHHGVERDHRGRQSGFE 337
           H +++ SY L  +     + +   L E++   +P K G K        E+   G ++  +
Sbjct: 500 HRTKEASY-LKKLMEAMQNVLPKILNEIFISLSPPKQGEKQ---AEKAEKGTDGTKTDPD 555

Query: 338 KRQRKPSIPKN*ICDKNDRREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTRRFGLENV 517
             +   ++      D ND++ED+   ++   R++  A     + +F    R  +  L+ +
Sbjct: 556 IEEGAGAVASKDNVDVNDQKEDIGKKKKDRTRKLHAALLSLSVAIFEKRIRDGK-DLDTL 614

Query: 518 KGKVASRSNSTQSFDEALR 574
            G++A R +S  SF   LR
Sbjct: 615 AGEIA-RGDSASSFVGKLR 632


>03_06_0318 + 33103467-33104232,33104332-33105548
          Length = 660

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 234 ENCTAKQIRQSSDLKRKLGITVWKEITEDVN 326
           E+CT  Q+++  +L RK    +WKE+ E+ N
Sbjct: 361 EHCTVDQLKKQIELDRKSISLLWKELEEERN 391


>05_07_0116 -
           27785083-27786123,27786201-27786278,27786364-27786976,
           27787128-27787213,27787316-27787438,27787600-27787734,
           27787930-27788019,27788796-27788981,27789560-27789661,
           27789787-27789900,27790010-27790153,27790260-27790325,
           27790895-27791056,27791668-27791916
          Length = 1062

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 163 EQADQLRAEWSRELARVEDEIATLRTVLQSKSVKART*NVNLASR 297
           E+ D LRAE + +L+  E+EIA L T +    + A     NL SR
Sbjct: 674 EREDALRAELASQLSEKEEEIARLNTKINQTEIHA----TNLISR 714


>02_01_0286 + 1921049-1921726
          Length = 225

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 392 RREDVFDHRRHHGRRVQQARSDAQLGVFPLHRRTRR 499
           RR+D    RRH G      R +   G FP+ RR RR
Sbjct: 90  RRDDRGSWRRHSGGNAIGLRQERASGGFPVKRRRRR 125


>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
          Length = 944

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 160 PEQADQLRAEWSRELARVEDEIATLR 237
           P ++DQL   W R +   +DE+A+L+
Sbjct: 61  PPESDQLARAWLRRVQEAQDEVASLK 86


>08_02_1364 -
           26415278-26415319,26415399-26415518,26415739-26415825,
           26416273-26416443,26416535-26416738
          Length = 207

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = -2

Query: 624 AAACARGWGAKVAPLASRSASSKL*VEFDLEA 529
           AAA A  WG K  PL +R ASSK  VE+ L+A
Sbjct: 7   AAAAAALWGHKHLPLLAR-ASSKESVEYILQA 37


>04_01_0283 +
           3768732-3768792,3769235-3769876,3769907-3770076,
           3770134-3770511,3770602-3770991
          Length = 546

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 225 RDFENCTAKQIRQSSDLKRKL-GITVWKEITEDVNQGLKNVKESQV 359
           + F+   AK IR+  DLKRK+  I V KE +E+V +  KN +  ++
Sbjct: 437 KSFDAEKAKFIREMGDLKRKIEEIQVSKEASEEVGRN-KNAEADRL 481


>01_01_0921 +
           7275019-7275363,7275422-7276147,7276289-7276346,
           7276773-7276972
          Length = 442

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +1

Query: 49  KSFSL*NMSGVQTAEEAMSGTGVAGDIH-TPDELAGLTPEQADQLRAEWSR-ELARVEDE 222
           +S+SL + + +  A   +SG GV+ D+H     +AG   E+   +  +  R E A  E+E
Sbjct: 53  RSWSL-SAAEISKALRVLSGKGVSDDVHDAAAAVAGDRKERRSPVTMDGRRHEQASEENE 111

Query: 223 IATLRTVLQSKSVKAR 270
            A++R    S +  A+
Sbjct: 112 AASMRADASSMAAAAQ 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,505,701
Number of Sequences: 37544
Number of extensions: 306920
Number of successful extensions: 1124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)