Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060310.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)                   60   2e-09
SB_56058| Best HMM Match : Phasin (HMM E-Value=2.7)                    33   0.28 
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)              30   1.5  
SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)                   29   2.7  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)           28   6.1  
SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
          Length = 829

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
 Frame = +3

Query: 246 AKQIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK-------TESVIKTTAEKT 404
           A++  Q +DLKR+LGIT W +I E +      V++S+ Y K       T+ V+   +EKT
Sbjct: 88  ARKENQLADLKRELGITAWSQIKEGLGNTYHGVQQSRAYNKLSQGASATKVVLVDASEKT 147

Query: 405 SSIIGGITAGVSSKLGQMRNSESFRSIE 488
            S +   ++  + KLG++R S SF+S E
Sbjct: 148 VSAVKTASSATAKKLGEIRQSNSFQSFE 175


>SB_56058| Best HMM Match : Phasin (HMM E-Value=2.7)
          Length = 314

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = +3

Query: 228 DFENCTAKQIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTS 407
           DF  C  K ++++ ++K ++  T++KE +    Q L +   S++  K  S++K     T 
Sbjct: 30  DFNKCATKMLKKAEEVKAEVFNTIYKEYSYAGFQDLSS-STSELNWKVSSLLKEIDATTK 88

Query: 408 SIIGGI 425
            + G I
Sbjct: 89  KVKGSI 94


>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
          Length = 1099

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 225 RDFENCTAKQIRQSSDLKRKLGITVWKEITEDVNQGLKNVKES 353
           RD    TAK I     + R L  T W+   E+V +G+ NVKES
Sbjct: 800 RDSIGNTAKSIGAKERIARSLEDT-WQPYIEEVTKGVGNVKES 841


>SB_36184| Best HMM Match : UBA (HMM E-Value=2.4e-09)
          Length = 1337

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +3

Query: 243 TAKQIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGG 422
           T K++    D   +L ITV   +   +NQ L +  E  +Y + +S+        +S    
Sbjct: 663 TPKRLLVKLDAPDRLDITVTTVLINMINQTLSSWTE-DLYGRADSLTSPAPSAATSSTTL 721

Query: 423 ITAGVSSKL-GQMRNSESF-RSIEERVG 500
           + AG SS L G     +SF RS+    G
Sbjct: 722 VAAGSSSTLVGSRSRDDSFSRSVSVESG 749


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 79  VQTAEEAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQ 249
           V+ +   +   G++GD+     L+ +  + +   R  WSREL R  D+  TL  +LQ
Sbjct: 585 VRRSYNTLKKVGLSGDLDNSHMLSVIERKMSADDRKVWSRELER--DKKTTLEGLLQ 639


>SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)
          Length = 431

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 293 HGVERDHRGRQSGFEKRQRKPSIPKN*ICDKND 391
           HG     RG Q+  +KR   P +PK+ +  K D
Sbjct: 369 HGENMIRRGSQASTQKRNMTPIVPKHVMAPKRD 401


>SB_37539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 231 FENCTAKQIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEK 401
           F+     Q+R+ SD+  K+G    +EI+E  N+ +K V E Q + +   +++    K
Sbjct: 532 FKKYLIHQVRRPSDVDLKIGDLTAQEISEAENEIVKYV-ERQSFPREMKILEVEERK 587


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
 Frame = +1

Query: 139  DELAGLTP--EQADQLRAEWSRELARVEDEI-ATLRTVLQSKSVKART 273
            DE AG+    EQA Q+  +  ++++RVED++ A+ + + Q +  K +T
Sbjct: 961  DEHAGMASSLEQAQQIAQQSKQDISRVEDKLEASQKKISQIQQEKQQT 1008


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,969,079
Number of Sequences: 59808
Number of extensions: 349714
Number of successful extensions: 1098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)