Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060310.seq
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68105-1|CAA92122.2| 195|Caenorhabditis elegans Hypothetical pr... 61 8e-10
Z73972-3|CAA98259.1| 305|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 29 4.1
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 7.1
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 28 7.1
U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL110487-2|CAB54425.1| 445|Caenorhabditis elegans Hypothetical ... 28 7.1
>Z68105-1|CAA92122.2| 195|Caenorhabditis elegans Hypothetical
protein F13E6.1 protein.
Length = 195
Score = 60.9 bits (141), Expect = 8e-10
Identities = 33/88 (37%), Positives = 53/88 (60%)
Frame = +3
Query: 243 TAKQIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGG 422
+A+Q + +++LKRKLG+T + E+++D+N+ LK V ++ YQKT V T++
Sbjct: 83 SARQ-KHAAELKRKLGLTPFSELSQDINRSLKTVTDTDAYQKTAEVAAATSDT------- 134
Query: 423 ITAGVSSKLGQMRNSESFRSIEERVGSA 506
V K MRNS F+S E ++GSA
Sbjct: 135 ----VKEKWNDMRNSSLFKSFESKLGSA 158
>Z73972-3|CAA98259.1| 305|Caenorhabditis elegans Hypothetical
protein F15H10.6 protein.
Length = 305
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 351 SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVGSA*KTS 518
++ +K E V KT EKT S+IG + +G++R + +EE + +TS
Sbjct: 126 AKAMEKLEHV-KTPMEKTKSLIGKFFNEMWKDVGKLREEVKYDHLEELLEQTLRTS 180
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 315 EDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL---GQMRNSESFRSI 485
ED + + N+K TES IKT++ K S+I + VS K+ G N +S +S
Sbjct: 660 EDKIELVDNIKTDNTTSNTESNIKTSSIKESNIETS-SLKVSKKIEGSGNKMNKKSKKSD 718
Query: 486 EERVGSA 506
++++ A
Sbjct: 719 DKKISKA 725
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.9 bits (59), Expect = 7.1
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +2
Query: 311 HRGRQSGFEKRQRKPSIPKN*ICDKNDRREDV-----FDHRRHHGRRVQQARSDAQLGVF 475
H G EKRQRK I +K+D +E+V F R +RV S G
Sbjct: 3932 HHGESIRVEKRQRKAKISAE--PEKDDDQENVPPKSRFSFLRGGQKRVLSYPSTLYSG-- 3987
Query: 476 PLHRRTRRFGLENVKGKVASRSNSTQ 553
PL R LEN+ + +S Q
Sbjct: 3988 PLETTDRDLDLENIPLSIPVHGSSDQ 4013
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.9 bits (59), Expect = 7.1
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +2
Query: 311 HRGRQSGFEKRQRKPSIPKN*ICDKNDRREDV-----FDHRRHHGRRVQQARSDAQLGVF 475
H G EKRQRK I +K+D +E+V F R +RV S G
Sbjct: 3921 HHGESIRVEKRQRKAKISAE--PEKDDDQENVPPKSRFSFLRGGQKRVLSYPSTLYSG-- 3976
Query: 476 PLHRRTRRFGLENVKGKVASRSNSTQ 553
PL R LEN+ + +S Q
Sbjct: 3977 PLETTDRDLDLENIPLSIPVHGSSDQ 4002
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.9 bits (59), Expect = 7.1
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +2
Query: 311 HRGRQSGFEKRQRKPSIPKN*ICDKNDRREDV-----FDHRRHHGRRVQQARSDAQLGVF 475
H G EKRQRK I +K+D +E+V F R +RV S G
Sbjct: 3921 HHGESIRVEKRQRKAKISAE--PEKDDDQENVPPKSRFSFLRGGQKRVLSYPSTLYSG-- 3976
Query: 476 PLHRRTRRFGLENVKGKVASRSNSTQ 553
PL R LEN+ + +S Q
Sbjct: 3977 PLETTDRDLDLENIPLSIPVHGSSDQ 4002
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.9 bits (59), Expect = 7.1
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +2
Query: 311 HRGRQSGFEKRQRKPSIPKN*ICDKNDRREDV-----FDHRRHHGRRVQQARSDAQLGVF 475
H G EKRQRK I +K+D +E+V F R +RV S G
Sbjct: 3932 HHGESIRVEKRQRKAKISAE--PEKDDDQENVPPKSRFSFLRGGQKRVLSYPSTLYSG-- 3987
Query: 476 PLHRRTRRFGLENVKGKVASRSNSTQ 553
PL R LEN+ + +S Q
Sbjct: 3988 PLETTDRDLDLENIPLSIPVHGSSDQ 4013
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.9 bits (59), Expect = 7.1
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +2
Query: 311 HRGRQSGFEKRQRKPSIPKN*ICDKNDRREDV-----FDHRRHHGRRVQQARSDAQLGVF 475
H G EKRQRK I +K+D +E+V F R +RV S G
Sbjct: 3921 HHGESIRVEKRQRKAKISAE--PEKDDDQENVPPKSRFSFLRGGQKRVLSYPSTLYSG-- 3976
Query: 476 PLHRRTRRFGLENVKGKVASRSNSTQ 553
PL R LEN+ + +S Q
Sbjct: 3977 PLETTDRDLDLENIPLSIPVHGSSDQ 4002
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.9 bits (59), Expect = 7.1
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +2
Query: 311 HRGRQSGFEKRQRKPSIPKN*ICDKNDRREDV-----FDHRRHHGRRVQQARSDAQLGVF 475
H G EKRQRK I +K+D +E+V F R +RV S G
Sbjct: 3921 HHGESIRVEKRQRKAKISAE--PEKDDDQENVPPKSRFSFLRGGQKRVLSYPSTLYSG-- 3976
Query: 476 PLHRRTRRFGLENVKGKVASRSNSTQ 553
PL R LEN+ + +S Q
Sbjct: 3977 PLETTDRDLDLENIPLSIPVHGSSDQ 4002
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
protein F45E4.4 protein.
Length = 2361
Score = 27.9 bits (59), Expect = 7.1
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +3
Query: 249 KQIRQSSDLKRKLGITVWKEITEDVNQ-GLKNV--KESQ-VYQKTESVIKTTAEKTSSII 416
+ IRQ S + K+ + E ++ + GLKN K +Q V T+SVIK ++ +
Sbjct: 352 EHIRQMSLMAEKMDEEILDEQSKPKSTFGLKNFFGKATQSVMHATDSVIKNVQNQSKQSL 411
Query: 417 GGITAGVSSKLGQMRNSESFRSIEE 491
G+T + Q S S +E
Sbjct: 412 SGLTQEELDNIAQATESAQQESKQE 436
>U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical
protein W05H9.1 protein.
Length = 414
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Frame = +3
Query: 249 KQIRQSSDLKRK---LGITVWKEITEDVNQGLKNV------KESQVYQKTESVIKTTAEK 401
K+ ++ ++ K+K I WKE+++ V + +++V KE + QK + +KT +K
Sbjct: 85 KEKQEKAEAKKKEAEAAIEKWKEVSQQVGEFVESVKEKKQAKEQEKQQKIDDFVKTFTDK 144
>AL110487-2|CAB54425.1| 445|Caenorhabditis elegans Hypothetical
protein Y39E4B.2 protein.
Length = 445
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 258 RQSSDLKRKLGITVWKEITEDVNQGLKNVKES 353
++ S LK KLGIT W ++ + + + K +K S
Sbjct: 204 KEYSRLKMKLGITSWMKLKDPIEELKKIIKTS 235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,939
Number of Sequences: 27780
Number of extensions: 253392
Number of successful extensions: 841
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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