Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060309.seq
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    29   3.1  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   3.1  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   3.1  
Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 339 PSRITPFNPFQIPLLNTIIL 398
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 339 PSRITPFNPFQIPLLNTIIL 398
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 339 PSRITPFNPFQIPLLNTIIL 398
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical
           protein T10H4.3 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 444 ENNFSQTKQRLFLTILLGFYFTFYKHMNI*KLLLQLLIEFMDPLFS*QQDFME 602
           ++NF  T Q  F+ I++ F+ T    M    LLLQL +     + S Q D +E
Sbjct: 190 QSNFDLTNQLCFIEIIIRFFQTLLYPMLTLTLLLQLHMIKKKRIISSQNDKVE 242


>Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical
           protein F55C5.2 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 591 PVAMKKVDP*ILSAIVKEASIYSYA 517
           P  +KK+DP I++ I  + S YSY+
Sbjct: 170 PWRLKKIDPKIITGITVDRSYYSYS 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,576,043
Number of Sequences: 27780
Number of extensions: 188626
Number of successful extensions: 383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)