Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060309.seq
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    87   1e-17
At5g19130.2 68418.m02277 GPI transamidase component family prote...    29   3.8  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    29   3.8  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 49/132 (37%), Positives = 66/132 (50%)
 Frame = +3

Query: 294 HRRLSPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQR 473
           H  L+P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH+++     +    
Sbjct: 106 HSSLAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYA 165

Query: 474 LFLTILLGFYFTFYKHMNI*KLLLQLLIEFMDPLFS*QQDFMEFM**LGTLFLLICYIRH 653
           L  T+LL   FT ++ M   +    +        F     F  F   +GTLFL+IC IR 
Sbjct: 166 LVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQ 225

Query: 654 LNNHFSKNHHFG 689
              H +K HH G
Sbjct: 226 YLGHLTKEHHVG 237



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 28/54 (51%), Positives = 36/54 (66%)
 Frame = +2

Query: 473 IIFNYFIRILFYILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGNFISI 634
           ++    + ++F   Q  EY +A FTI+D IYGSTFF+ATGFHG HVIIG    I
Sbjct: 166 LVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLI 219


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 512 LQAYEYIEASFTIADRIYGSTFFIATGFHG 601
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 352 IPAADYLEGSATLASSLYSQALGIPTGPHG 381


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 512 LQAYEYIEASFTIADRIYGSTFFIATGFHG 601
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 355 IPAADYLEGSATLASSLYSQALGIPTGPHG 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,707,010
Number of Sequences: 28952
Number of extensions: 164864
Number of successful extensions: 247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)