Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060308.seq
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F34756 Cluster: IgGFc-binding protein precursor ...    36   1.1  
UniRef50_UPI0000ECA18C Cluster: UPI0000ECA18C related cluster; n...    34   3.5  

>UniRef50_UPI0000F34756 Cluster: IgGFc-binding protein precursor
           (FcgammaBP) (Fcgamma-binding protein antigen).; n=2; Bos
           taurus|Rep: IgGFc-binding protein precursor (FcgammaBP)
           (Fcgamma-binding protein antigen). - Bos Taurus
          Length = 2828

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 500 TKCCLEVGVPLGGWSSGVAC---CP-NCRHQLRVSLAPASGKCHALPS 631
           T+ CLE+G+ +G W S   C   CP N R++L      AS    A PS
Sbjct: 721 TQACLELGISVGNWRSSANCPLSCPANSRYELCAPACQASCNPDAAPS 768


>UniRef50_UPI0000ECA18C Cluster: UPI0000ECA18C related cluster; n=1;
           Gallus gallus|Rep: UPI0000ECA18C UniRef100 entry -
           Gallus gallus
          Length = 175

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 518 VGVPLGGW-SSGVA--CCPNCRHQ-LRVSLAPASGKCHALPSPHTPP 646
           +G   G W +SGVA  C    RH+ L  + APA+G   A PSP  PP
Sbjct: 40  LGTDAGTWINSGVARLCWDRRRHRVLGSTAAPAAGSAPASPSPSVPP 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,702,623
Number of Sequences: 1657284
Number of extensions: 10263541
Number of successful extensions: 23656
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23652
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)