Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060308.seq
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.7  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   3.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 299 LCFYFFNYLHSTMNIXVIXXVXKMXVIVCI 210
           +C Y+F Y+H       I     +  ++CI
Sbjct: 256 VCIYYFYYMHLLFCCAFIIFTMHLLFLLCI 285



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 356 FHVKITQHCTFKA*TFTEFLCFYFFNY 276
           F V +  +C F   T    LC Y+F Y
Sbjct: 79  FTVHLLFYCPFIIFTVHFLLCTYYFYY 105


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 455 NNKPIKYDSCSAXYPTKCCLE 517
           NN P +Y S     PT  C E
Sbjct: 178 NNSPDQYQSYQILLPTPTCSE 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,443
Number of Sequences: 336
Number of extensions: 2773
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)