Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060308.seq
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0456 - 23797057-23797383                                         28   7.5  
06_02_0067 - 11087664-11087786,11087954-11088000,11088217-110883...    28   7.5  
07_01_1166 - 11025276-11025374,11025508-11026431                       27   9.9  

>11_06_0456 - 23797057-23797383
          Length = 108

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +3

Query: 381 GNKVGGSDNCPPEKKQMCLIKRRETTISPLNMTLAARXTPQNAA--WK*VXLWVAGRQVW 554
           G   GG +  P  K +      +ETT +P+     A     +AA   K +   +   Q  
Sbjct: 17  GYLFGGGETAPAAKAKPAAAAEKETTPAPVKKAAVAAAASPSAAEKMKEIPAGIQSTQAN 76

Query: 555 HAVRIAGTNC 584
           +  R  G NC
Sbjct: 77  NYFRAQGQNC 86


>06_02_0067 -
           11087664-11087786,11087954-11088000,11088217-11088384,
           11089278-11089491,11091102-11091275
          Length = 241

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 497 PTKCCLEVGV-PLGGWSSGVACCPNCRHQLRVSLAPASGKCHALPSPHTPPLTV 655
           P    L +GV  L  W SG +  P    Q  V+ A A     A  +P  PPLT+
Sbjct: 156 PGLAILALGVLSLKVWRSGKSSLPFILAQAAVAAAVAWKHFQAYTTPFAPPLTI 209


>07_01_1166 - 11025276-11025374,11025508-11026431
          Length = 340

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = -3

Query: 624 NA*HLPDAGASDTRSWCLQFGQHATPDDQPPRGTPTSKQHFVG*XALQESYLMG 463
           N  HL  A ASD R     +G    PD +PPR  P S   F     L+ +Y+ G
Sbjct: 133 NLEHLDFAYASDGR----YYGIGVNPDPRPPRPLPPSALRFA--PTLRTAYIGG 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,547,175
Number of Sequences: 37544
Number of extensions: 303485
Number of successful extensions: 887
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)