Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060308.seq
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 29 4.4
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 29 4.4
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 29 4.4
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 29 4.4
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 29 4.4
SB_40061| Best HMM Match : PHD (HMM E-Value=0.015) 29 4.4
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 29 4.4
SB_6963| Best HMM Match : PHD (HMM E-Value=0.054) 29 4.4
SB_54579| Best HMM Match : RVT_1 (HMM E-Value=2.7e-20) 28 5.8
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.8
SB_31295| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-11) 28 5.8
SB_20672| Best HMM Match : PHD (HMM E-Value=0.088) 28 5.8
SB_50382| Best HMM Match : RVT_1 (HMM E-Value=0.026) 28 5.8
SB_50112| Best HMM Match : PHD (HMM E-Value=0.0011) 28 5.8
SB_40248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +2
Query: 479 SCSAXYPTKCCLEVGVPLGGWSSGVACCP-----NCRHQLRVSLAPASG-KCHALPSPHT 640
+C P+KCCL + PL + A CP +C+ + PA+ KC S H+
Sbjct: 1466 NCKPDCPSKCCLTILEPLQEGPNATAYCPSDCFESCKPNCPIKCCPATAIKCPVGCSEHS 1525
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NNKPIKYDSCSAXYPTKCC 511
N K I+ D C A Y TKCC
Sbjct: 94 NQKGIQCDYCDAWYHTKCC 112
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NNKPIKYDSCSAXYPTKCC 511
N K I+ D C A Y TKCC
Sbjct: 107 NQKGIQCDYCDAWYHTKCC 125
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NNKPIKYDSCSAXYPTKCC 511
N K I+ D C A Y TKCC
Sbjct: 63 NQKGIQCDYCDAWYHTKCC 81
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NNKPIKYDSCSAXYPTKCC 511
N K I+ D C A Y TKCC
Sbjct: 63 NQKGIQCDYCDAWYHTKCC 81
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NNKPIKYDSCSAXYPTKCC 511
N K I+ D C A Y TKCC
Sbjct: 362 NQKGIQCDYCDAWYHTKCC 380
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NNKPIKYDSCSAXYPTKCC 511
N K I+ D C A Y TKCC
Sbjct: 648 NQKGIQCDYCDAWYHTKCC 666
>SB_40061| Best HMM Match : PHD (HMM E-Value=0.015)
Length = 260
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NNKPIKYDSCSAXYPTKCC 511
N K I+ D C A Y TKCC
Sbjct: 107 NQKGIQRDYCDAWYHTKCC 125
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NNKPIKYDSCSAXYPTKCC 511
N K I+ D C A Y TKCC
Sbjct: 187 NQKGIQCDYCDAWYHTKCC 205
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NNKPIKYDSCSAXYPTKCC 511
N K I+ D C A Y TKCC
Sbjct: 26 NQKGIQCDYCDAWYHTKCC 44
>SB_6963| Best HMM Match : PHD (HMM E-Value=0.054)
Length = 146
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 455 NNKPIKYDSCSAXYPTKCC 511
N K I+ D C A Y TKCC
Sbjct: 107 NQKGIQCDYCDAWYHTKCC 125
>SB_54579| Best HMM Match : RVT_1 (HMM E-Value=2.7e-20)
Length = 308
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +1
Query: 355 NKQCEPWPLGIRWVDQTTVHRRKSKCA 435
N+ + WP +++VD TT++ +C+
Sbjct: 171 NRLVDNWPYRVKYVDDTTIYEAVPRCS 197
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = +2
Query: 380 WE*GGWIRQLSTGEKANVLN*KARDNNKPIKYDSCSAXYPTKCCLEVGVPLGGWSSGVAC 559
W+ ++ +L+ G+K + + + N I+ D C + C + + + +C
Sbjct: 38 WKAHFFLNELNPGDKCGICSKSIKMNQAGIQCDQCDFWFHADTCCNISPAMFSILANSSC 97
Query: 560 ---CPNC 571
CP C
Sbjct: 98 TWICPQC 104
>SB_31295| Best HMM Match : Exo_endo_phos (HMM E-Value=7.1e-11)
Length = 548
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = +2
Query: 380 WE*GGWIRQLSTGEKANVLN*KARDNNKPIKYDSCSAXYPTKCCLEVGVPLGGWSSGVAC 559
W+ ++ +L+ G+K + + + N I+ D C + C + + + +C
Sbjct: 38 WKAHFFLNELNPGDKCGICSKSIKMNQAGIQCDQCDFWFHADTCCNISPAMFSILANSSC 97
Query: 560 ---CPNC 571
CP C
Sbjct: 98 TWICPQC 104
>SB_20672| Best HMM Match : PHD (HMM E-Value=0.088)
Length = 142
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 437 N*KARDNNKPIKYDSCSAXYPTKCC 511
N + N K I+ D+C+ Y T+CC
Sbjct: 103 NKPVKSNQKGIQCDNCNLWYHTRCC 127
>SB_50382| Best HMM Match : RVT_1 (HMM E-Value=0.026)
Length = 1036
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 437 N*KARDNNKPIKYDSCSAXYPTKCC 511
N + N K I+ D+C+ Y T+CC
Sbjct: 537 NKPVKSNQKGIQCDNCNLWYHTRCC 561
>SB_50112| Best HMM Match : PHD (HMM E-Value=0.0011)
Length = 357
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 437 N*KARDNNKPIKYDSCSAXYPTKCC 511
N + N K I+ D+C+ Y T+CC
Sbjct: 117 NKPVKSNQKGIQCDNCNLWYHTRCC 141
>SB_40248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 381 GNKVGGSDNCPPEKKQMCLIKRRETTIS 464
G K GGS NCPP K C R ++S
Sbjct: 10 GKKPGGSGNCPP-KFNDCYWSNRSVSVS 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,927,443
Number of Sequences: 59808
Number of extensions: 346616
Number of successful extensions: 752
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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