Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060308.seq
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    27   8.9  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    27   8.9  
AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    27   8.9  

>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3b protein.
          Length = 1398

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = +2

Query: 482  CSAXYPTKCCLEVGVPLGGWSSGVACCPNCRHQLRVSLAPASG 610
            CS      C +     +G       CCP   +   V LAP +G
Sbjct: 975  CSITNKDSCPVNFWCHIGATPETTVCCPGATNPCSVPLAPGTG 1017


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = +2

Query: 482  CSAXYPTKCCLEVGVPLGGWSSGVACCPNCRHQLRVSLAPASG 610
            CS      C +     +G       CCP   +   V LAP +G
Sbjct: 1393 CSITNKDSCPVNFWCHIGATPETTVCCPGATNPCSVPLAPGTG 1435


>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 467 IKYDSCSAXYPTKC--CLEVGVPLGGWSSGVACCPNCRHQLRVSLAPASGKCHALPSPHT 640
           +K  + +    + C  CL  G P   W+ GV C  + R   R S +  SG C  +   + 
Sbjct: 457 LKVPTATCHLASNCAECLAHGDPHCAWADGVDCI-DIRTDQRKSASQDSGTCDVVSFENH 515

Query: 641 PPLTV 655
            P+ +
Sbjct: 516 KPVMI 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,952
Number of Sequences: 27780
Number of extensions: 261070
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)