Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060308.seq
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31615.1 68417.m04491 transcriptional factor B3 family protei...    29   2.7  
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ...    27   8.3  

>At4g31615.1 68417.m04491 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 478

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 316 HALNVQCCVIFTWNKQCEPWPLGIRW 393
           + LN +CC I   NK  + W LG+R+
Sbjct: 176 NGLNERCCEIDLMNKHGKSWTLGLRY 201


>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 446

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -3

Query: 594 SDTRSWCLQFGQHATPDDQPPR---GTPTS 514
           S  RSW L    H  PD  PP    GTPT+
Sbjct: 413 SQHRSWPLLMVNHNLPDSSPPASTDGTPTA 442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,205,195
Number of Sequences: 28952
Number of extensions: 229961
Number of successful extensions: 539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)