Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060307.seq
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    29   0.58 
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    27   2.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   2.3  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   7.2  

>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 356 SLPGPXTSRSLQPHSTLHHLIPTVXIQEHNLGXIVDQLCTSLQXIKDHEXS 508
           +LP P +S S  P     H IPT+ I    L   VD L ++L  ++  E S
Sbjct: 134 NLPEPPSSMSEWPQWLASHDIPTLAINNPKLPMHVDALKSALDALQVSEAS 184


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 527 HV-GIPMKNXRDLLXPGD*YTADQQCXLNCV 438
           HV G P +     L PGD  T DQ+  +NCV
Sbjct: 124 HVNGKPERRAYRQLLPGDLVTVDQKSVMNCV 154


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 293 LITTDTIXGRMRKHKSRXQGXSLPGPXTSRSLQPHS 400
           + TTD + GR   +KSR +  SL GP   + L+ H+
Sbjct: 10  IATTDNVIGR---NKSRKRPHSLGGPGALQELKEHT 42


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 209  EGXTKDRFIHTXHGDIKWTHEIYVR 283
            +G +KD  +HT +G  KW  E  VR
Sbjct: 1171 QGSSKD--LHTGYGQSKWVSEYLVR 1193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,734
Number of Sequences: 5004
Number of extensions: 35530
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)