Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060306.seq
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0VJV7 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q5CTQ5 Cluster: Putative uncharacterized protein; n=2; ...    36   1.2  
UniRef50_Q30QL4 Cluster: Acriflavin resistance protein; n=1; Thi...    34   3.7  
UniRef50_UPI000023F40F Cluster: hypothetical protein FG02733.1; ...    33   8.6  
UniRef50_UPI00006615CF Cluster: Homolog of Homo sapiens "Golgi a...    33   8.6  
UniRef50_Q4SRB9 Cluster: Chromosome 11 SCAF14528, whole genome s...    33   8.6  
UniRef50_Q7M912 Cluster: RND PUMP PROTEIN; n=1; Wolinella succin...    33   8.6  

>UniRef50_A0VJV7 Cluster: Putative uncharacterized protein; n=1;
           Delftia acidovorans SPH-1|Rep: Putative uncharacterized
           protein - Delftia acidovorans SPH-1
          Length = 113

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +2

Query: 506 VIGMPTCSIEQAEAVRPILRCISS---SEERARVTFAVLSASTWLGV 637
           V G+PT SI QA  +  + RC+     SEE+++  F +  A  +LGV
Sbjct: 49  VFGLPTISIIQAWGIAQVFRCLQGLKLSEEKSKDGFGIALAKAFLGV 95


>UniRef50_Q5CTQ5 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 268

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 500 DSVIGMPTCSI--EQAEAVRPILRCISSSEERARVTFAVLSAS 622
           D  + +P C++  E+   V+P+L C+S SEE   +T+ +LS S
Sbjct: 34  DRCVELPDCALNFEKLGIVQPLLSCLSRSEEVRSITYQILSKS 76


>UniRef50_Q30QL4 Cluster: Acriflavin resistance protein; n=1;
           Thiomicrospira denitrificans ATCC 33889|Rep: Acriflavin
           resistance protein - Thiomicrospira denitrificans
           (strain ATCC 33889 / DSM 1351)
          Length = 1013

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = -2

Query: 323 PALDSVCRYQTPSSHINLVSPFYIAVGRVYKSILCLVLRY*YMLI 189
           P+L +    +  S   N+  PF+ A+ R+Y++IL  VLR+ Y+++
Sbjct: 474 PSLSARVLRKDESKFYNMTEPFFRAIERLYEAILKKVLRFKYLVL 518


>UniRef50_UPI000023F40F Cluster: hypothetical protein FG02733.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG02733.1 - Gibberella zeae PH-1
          Length = 903

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
 Frame = +2

Query: 374 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQD--IKDHEDSVIGMPTCSIEQAEA 547
           ++ TS+ ST+   IPT  I+   +  I        ++   KD  D    +P     + E 
Sbjct: 178 IQWTSSKSTVQDTIPTQ-IESFEVDYITSGTLAEFREGIFKDKPDVFSALPKTPNSEPEL 236

Query: 548 VRPILRCISSSEERAR-VTFAVLSA--STWLGVVRLS 649
           V  +LR +S  +ER   V  AV S   ST L + +LS
Sbjct: 237 VALVLRTLSQGQERPHSVVLAVSSGAPSTTLDIQKLS 273


>UniRef50_UPI00006615CF Cluster: Homolog of Homo sapiens "Golgi
            autoantigen, golgin subfamily B member 1; n=1; Takifugu
            rubripes|Rep: Homolog of Homo sapiens "Golgi autoantigen,
            golgin subfamily B member 1 - Takifugu rubripes
          Length = 4286

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 21/77 (27%), Positives = 38/77 (49%)
 Frame = +2

Query: 359  LRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQ 538
            L++C  +I S    L      + +   N+    +QL    QD+K  ED++I +   ++ +
Sbjct: 794  LQSCEREIDSLKDVLLEKDKEISVLSGNISEYTEQLIALKQDLKMKEDNLIQVEN-ALSK 852

Query: 539  AEAVRPILRCISSSEER 589
            AE    ILR   +S++R
Sbjct: 853  AEREVSILRESQNSDQR 869


>UniRef50_Q4SRB9 Cluster: Chromosome 11 SCAF14528, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 11
           SCAF14528, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 1173

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 452 IVDQLCT----SLQDIKDHEDSVIGMPTCSIEQAEAVRPILRCISSSEER 589
           IV Q C     S  +++DHEDS    P  S +Q   V  I+RC+  +  R
Sbjct: 468 IVSQACVPPANSNPEVRDHEDSRKQAPVPSYQQINCVDNIIRCVVEASSR 517


>UniRef50_Q7M912 Cluster: RND PUMP PROTEIN; n=1; Wolinella
           succinogenes|Rep: RND PUMP PROTEIN - Wolinella
           succinogenes
          Length = 1009

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = -2

Query: 323 PALDSVCRYQTPSSHINLVSPFYIAVGRVYKSILCLVLRY*YMLISLACCLLVFRFSI 150
           P + S+      +    L  PF+IA+ R Y  IL  VLR+ Y ++ LA  LL F FS+
Sbjct: 473 PMISSLIANPEQNRFYRLSEPFFIALDRTYLKILEGVLRFRYWIV-LAIFLL-FAFSL 528


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,099,817
Number of Sequences: 1657284
Number of extensions: 14119787
Number of successful extensions: 29997
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29990
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)