Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060306.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    28   1.5  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    27   2.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   5.9  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   5.9  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.8  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   7.8  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   7.8  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   7.8  

>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 431 QEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQAEAVRPILRCI 571
           QE+ L N +  L  S  ++      ++G+P  SI++ E+   IL+CI
Sbjct: 202 QENQLANNIAGLAFS-NNVNPLPADLVGLPRLSIQKFESPLEILKCI 247


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -1

Query: 249 RGPCV*IDPLFGPSLLIHAYIFGLLFASVSILDMMHRLTLNIFAIALSLASNEY 88
           R P V +  +FG +++   YI GL++ +  +L+   R T N+  +A    SN Y
Sbjct: 679 RNPFVFMILMFGGTVVYGLYISGLIWPAKMVLE---RATNNLVDLATDRFSNTY 729


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 401  LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQA 541
            L+ LI  + I +HN  N    L  ++ + K H   ++G+    +++A
Sbjct: 2380 LYSLIRLIFISQHNGKNPYYDLIVNISENKQHRADIVGLLLYILQEA 2426


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 600 VTLALSSELEMQRNIGRTASA-CSIEHVGIPITESS*SFMSWRLVHS*STMFPKLCS*MQ 424
           +++ LS +++++  +G T+     IE +    T       S+ L HS STMFP+  S MQ
Sbjct: 520 LSIPLSIQVDVEEPVGPTSILQWIIECLRSQSTVPFYGLESYGLPHSCSTMFPQTLSLMQ 579


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -1

Query: 177 LFASVSILDMMHRLTLNIFAIALSLASNEYTLRAPLTSVII*TTLEYHVISVYTHPT 7
           L   VS+ D     T +   + LS+  N +       + +  T++EY++ + Y HPT
Sbjct: 235 LTVPVSVWDARQPPTSSRSGLPLSVMYNHFPSVPIPPATVNDTSMEYYLPNAYPHPT 291


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 207 LLIHAYIFGLLFASVS-ILDMMHRLTLNIFAIALSLASNEYTL-RAPLTSV 61
           +++     G+L  ++  +LD +H+L + ++    SL    Y++  APL S+
Sbjct: 380 IMLGGLFLGILAVAIHLVLDAVHKLPMQVYFFLYSLMIYGYSIGSAPLISL 430


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 488 LCPGD*YTADQQCFLNCV 435
           L PGD  T DQ+  +NCV
Sbjct: 137 LLPGDLVTVDQKSVMNCV 154


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 374 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQL 466
           +K+T+ H T   ++  V   EHNL   ++Q+
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQV 164


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 573 EMQRNIGRTASACSIEHVGI 514
           E Q  IGRT S  S EH GI
Sbjct: 252 EAQTGIGRTGSMFSFEHHGI 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,433
Number of Sequences: 5004
Number of extensions: 61086
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)