Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060306.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0639 + 5383967-5385951,5386973-5387066,5387410-5387841,538...    30   1.5  
05_01_0231 - 1730428-1730817                                           29   3.5  
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486...    29   4.6  
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188...    29   4.6  

>12_01_0639 +
           5383967-5385951,5386973-5387066,5387410-5387841,
           5387935-5388219,5388324-5388641,5388756-5388983,
           5389264-5389364,5389447-5389552,5389782-5390132,
           5390262-5390401,5390687-5390861,5390937-5390954
          Length = 1410

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -1

Query: 675 ACHFGCDFSDSLTTPSQVEADNTAKVTLALSSELEMQRNIGRTASACS----IEHVGIPI 508
           A H G   +    + SQ E    +K   ALS+EL     +GR  SA +    + H G+P 
Sbjct: 34  ALHAGAAAAARGASSSQAELRPDSKNAPALSAELRRLARVGRLPSALALLDHLSHRGVPA 93

Query: 507 TESS 496
           T S+
Sbjct: 94  TASA 97


>05_01_0231 - 1730428-1730817
          Length = 129

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 350 GDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKD 493
           GD  R C  K+   +  LH L+  V   +H  G I+ +  +SLQ+I D
Sbjct: 80  GDRNRLCGEKLKKRY--LHELLRDVEPDDHKHGGILQRCKSSLQEIVD 125


>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
            29048829-29049210,29049370-29049513,29049593-29049777,
            29049925-29050051,29050603-29050676,29051071-29051147,
            29051256-29051292,29051453-29051619,29051800-29051983,
            29052053-29052130,29052451-29052570,29052648-29052707,
            29053057-29053179,29053848-29053941,29054019-29054197,
            29054737-29055039,29055373-29055474,29055553-29055693,
            29055831-29055995,29056168-29056344,29056432-29056554,
            29057787-29057867,29057983-29058099,29058214-29058386,
            29058846-29058923,29058994-29059141,29059755-29059877,
            29060015-29060071,29060145-29060255,29060382-29060573,
            29060690-29060863,29061263-29061373,29061462-29061531,
            29061734-29061812,29061898-29062000,29062086-29062256,
            29062348-29062470,29062548-29062661,29062935-29063041,
            29063117-29063168,29063245-29063351,29063589-29063703,
            29063819-29063929,29064016-29064153,29064230-29064352,
            29064535-29064606,29064774-29064886,29066780-29067110,
            29067199-29067381,29068669-29068863,29068943-29069110,
            29069208-29069340,29069511-29069595,29069726-29069765
          Length = 2591

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/83 (21%), Positives = 39/83 (46%)
 Frame = +2

Query: 383  TSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQAEAVRPIL 562
            T     L+H++ TV     ++G ++++LC  L+   D   +++G+    +    A    +
Sbjct: 986  TFVFPVLYHVLSTVPAYHPSVGPMLNELCLGLKS-NDLAQALVGVYAKEVHVRLACLTAI 1044

Query: 563  RCISSSEERARVTFAVLSASTWL 631
            +CI S   +  +    +S S W+
Sbjct: 1045 KCIPSHSVQRDLQ---VSTSLWI 1064


>02_01_0282 +
           1882844-1883413,1883519-1883644,1883733-1883930,
           1884442-1884666,1884844-1885224,1885282-1885989,
           1886546-1886839,1887211-1887709,1887949-1888721
          Length = 1257

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 512 GMPTCSIEQAEAVRPILRCISSSEERARVTFAVLSASTWLGVVRLSLKSQPKWHANCL 685
           G+  C+     A+R ++R ISSS E AR  FA+  A     +  +S+++  K   N L
Sbjct: 166 GLENCAPSVRYAIRRLIRGISSSREFARQGFALGLAVVLESIHAISVEAIMKLIPNLL 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,265,407
Number of Sequences: 37544
Number of extensions: 396599
Number of successful extensions: 745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)