Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060306.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 33   0.29 
SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)                     31   0.87 
SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)        31   1.2  
SB_35718| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-09)        30   1.5  
SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)        30   1.5  
SB_54959| Best HMM Match : TatC (HMM E-Value=0.44)                     29   2.7  
SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)                     29   3.5  
SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)                 28   6.2  
SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)               28   6.2  
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_31317| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 76  TPYFCNNLNDVRISCYISIHTP 11
           TP +CNNL D+R   Y +IH P
Sbjct: 722 TPQWCNNLEDLRSQLYYTIHLP 743


>SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)
          Length = 272

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
 Frame = +2

Query: 350 GDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTS-LQDIKDHEDSVIGMPTC 526
           G  LR   V+      T  +++P +   +      + +L    L +I DHE  +   P C
Sbjct: 115 GHGLRPVDVEFMKALHTKVNIVPVIAKSDSLTKTEISRLKRKVLDEIADHEIKIYSFPEC 174

Query: 527 SIEQAEAVRPILRCISSSEERARVTFAVLSASTWLGVVRLSLKSQPKWH 673
             E  E    I     + + +A + FAV+ ++T + V     K + +W+
Sbjct: 175 DSEDDEEFLAI-----NKDLKASLPFAVIGSNTVIEV--KGRKVRARWY 216


>SB_23246| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.3e-09)
          Length = 305

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -1

Query: 198 HAYIFGLLFASVSILDMMHRLTLNIFAIALSLASNEYTLRAPLTSVII 55
           H YI G L+A    +D+   + +++F   LS   NE  +RAP   VII
Sbjct: 213 HGYIVGPLYADY--IDVAAVMLISLFEAILSKHGNERQVRAPNICVII 258


>SB_35718| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-09)
          Length = 305

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -1

Query: 198 HAYIFGLLFASVSILDMMHRLTLNIFAIALSLASNEYTLRAPLTSVII 55
           H YI G L+A    +D+   + +++F   LS   NE  +RAP   VII
Sbjct: 213 HGYIVGPLYADS--IDVAAVMLISLFEAILSKHGNERQVRAPNICVII 258


>SB_24193| Best HMM Match : Acetyltransf_1 (HMM E-Value=5.8e-08)
          Length = 281

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -1

Query: 198 HAYIFGLLFASVSILDMMHRLTLNIFAIALSLASNEYTLRAPLTSVII 55
           H YI G L+A    +D+   + +++F   LS   NE  +RAP   VII
Sbjct: 213 HGYIVGPLYADS--IDVAAVMLISLFEAILSKHGNERQVRAPNICVII 258


>SB_54959| Best HMM Match : TatC (HMM E-Value=0.44)
          Length = 359

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/70 (24%), Positives = 37/70 (52%)
 Frame = -1

Query: 231 IDPLFGPSLLIHAYIFGLLFASVSILDMMHRLTLNIFAIALSLASNEYTLRAPLTSVII* 52
           ++P+   + ++ A+I  +    + I +++HR T  +F   L+LA+       P   VI+ 
Sbjct: 253 VEPVSQENQVVIAFIILVFVYVLIIFELVHRATAAMFGALLALATLSMLNMRPSLEVIL- 311

Query: 51  TTLEYHVISV 22
           T +E+  +S+
Sbjct: 312 TWIEWDTLSL 321


>SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)
          Length = 766

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 526 FYRTSRGCTSNITLHFQL*RKGKSHLCSIICLHLAWCRK 642
           F R  +G TSN  L F+L +K K  L  II   +A C++
Sbjct: 511 FVRDIKGATSNYNLTFELAKKLKEDLKRIINRIIAGCKQ 549


>SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 149 ISRIET-LANNRPKI*ACISNEGPNKGSIYTHGPRRCKMDSRDLCAM 286
           + R+E  L+NN  K+   ISN G   G+I  H  R+C+ + R LC +
Sbjct: 354 VYRVEKILSNNTKKMVGSISN-GKLMGTIDIHSRRKCR-NPRSLCVV 398


>SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 971

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -1

Query: 633 PSQVEADNTAKVTLALSSELEMQRNIGRTASACSIEHVGIPITESS*SFMSWR 475
           P +VE+   A+  + ++S +E+Q N+       + E++ I + E+    MSW+
Sbjct: 491 PGKVESIVNARAPVNVTSYVELQSNVEFPVGDDTREYISIIVQEAVPEAMSWQ 543


>SB_20600| Best HMM Match : zf-C3HC4 (HMM E-Value=0.65)
          Length = 963

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 368 CHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQAEA 547
           C   IT  H    H I + C++E  +G        +LQ++ D    + G  TCS++Q   
Sbjct: 446 CKGDITVLHE---HNICSSCMEESGIGICAVCRKITLQEL-DSSKYISGKSTCSLDQILG 501

Query: 548 VRPILRC 568
           +   ++C
Sbjct: 502 IPTCVKC 508


>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
          Length = 382

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 371 HVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDS--VIGMPTCSIE 535
           H+K    HSTL   +  VC     L ++ D  C +  D++ H +S   +   TC+++
Sbjct: 253 HIKFR--HSTLRPYVCDVCDYRLVLISLFDYSCKTCSDLRRHRESHNAVFSYTCAVQ 307


>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1888

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 323  PALDSVCRYQTPSSHINLVSPFYIAVGRVYKSIL 222
            P L  +C   TP  H NL SP  +  GRVY+S L
Sbjct: 1720 PHLAMLCLRTTPIDH-NLPSPAELLNGRVYQSNL 1752


>SB_31317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 210 KDQTKDRFIHTAHGDVKWTHEIYVR*WC 293
           K+   D     A G+++W H+I  R WC
Sbjct: 784 KEGPHDMLEEWAQGNIRWLHDIKDRIWC 811


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,113,422
Number of Sequences: 59808
Number of extensions: 492311
Number of successful extensions: 1118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)