Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060306.seq
         (687 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   3.0  
DQ518576-1|ABF66618.1|  276|Anopheles gambiae putative cytoplasm...    23   6.8  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   9.0  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
            topoisomerase protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 388  NTLHTSSSDTYSLHSGTQFRKHC*SAVY*SPGHKRSR 498
            NT  +SSS   S HSGT   K   +    SPG K+ R
Sbjct: 966  NTNSSSSSGKKSSHSGTNSSKRKKTV---SPGEKKDR 999


>DQ518576-1|ABF66618.1|  276|Anopheles gambiae putative cytoplasmic
           carbonic anhydrase protein.
          Length = 276

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 681 QFACHFGCDFSDSLTTPSQVEADNTA 604
           QF CH+GC  SDS  +   V+ ++ A
Sbjct: 93  QFHCHWGC--SDSRGSEHTVDGESFA 116


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 321 RMRKHKXXXRAIACGPATSRSLQHTP 398
           R R+ +   RA    PAT+R ++H P
Sbjct: 500 RARRRRCRPRARRNPPATTRPVRHRP 525


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,747
Number of Sequences: 2352
Number of extensions: 16644
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)