Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060306.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine rece...    29   4.1  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    29   4.1  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    29   4.1  
Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocar...    28   5.4  
U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U00049-4|AAC47055.1|  332|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 3 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/64 (21%), Positives = 28/64 (43%)
 Frame = +2

Query: 461 QLCTSLQDIKDHEDSVIGMPTCSIEQAEAVRPILRCISSSEERARVTFAVLSASTWLGVV 640
           QLC S  +I  +    + +  C +    A++P++    +    + V F V  +  W   +
Sbjct: 83  QLCVSFSEIVKNSPVFMRIYYCLLSYLIAIKPVIHIFIAVNRMSCVMFPVTYSQNWSQKL 142

Query: 641 RLSL 652
           R+ L
Sbjct: 143 RIML 146


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 687 GRQFACHFGCDFSDSLTTPSQVEADNTAKVTLALSS 580
           G QF CHFG +   ++  P +VE+    +  +A+ +
Sbjct: 555 GAQFWCHFGANQDTTVCCPGRVESPQICQQPMAVGT 590


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 687  GRQFACHFGCDFSDSLTTPSQVEADNTAKVTLALSS 580
            G QF CHFG +   ++  P +VE+    +  +A+ +
Sbjct: 973  GAQFWCHFGANQDTTVCCPGRVESPQICQQPMAVGT 1008


>Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical
           protein C41G7.5b protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 365 PAGYRP-AXXLVFTHPALDSVCRYQTPSSHINL 270
           P G+ P A  LV  HP +     Y TPS+H +L
Sbjct: 506 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 538


>Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical
           protein C41G7.5a protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 365 PAGYRP-AXXLVFTHPALDSVCRYQTPSSHINL 270
           P G+ P A  LV  HP +     Y TPS+H +L
Sbjct: 548 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 580


>AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocarbon
           receptor orthologAHR-1 protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 365 PAGYRP-AXXLVFTHPALDSVCRYQTPSSHINL 270
           P G+ P A  LV  HP +     Y TPS+H +L
Sbjct: 548 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 580


>U50308-2|AAG24028.1|  791|Caenorhabditis elegans Hypothetical
           protein F07C3.3 protein.
          Length = 791

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 335 VFTHPALDSVCRYQTPSSHINLVSPFYIA 249
           + TH   D+ C++  P+S+   + PF+++
Sbjct: 142 LLTHHPFDNTCKFPLPNSYAEDIIPFHLS 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,734,456
Number of Sequences: 27780
Number of extensions: 359245
Number of successful extensions: 807
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)