Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060306.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12900.1 68417.m02018 gamma interferon responsive lysosomal t...    28   6.7  
At3g59380.1 68416.m06622 farnesyltransferase alpha subunit, puta...    28   6.7  
At2g39690.1 68415.m04869 expressed protein contains Pfam profile...    28   6.7  

>At4g12900.1 68417.m02018 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 231

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 239 HGPRRCKMDSRDLCAMMVFDNDR-HYQ 316
           HG   CK+++ + CA+  + N R HY+
Sbjct: 92  HGEEECKLNALEACAIRTWPNQRLHYK 118


>At3g59380.1 68416.m06622 farnesyltransferase alpha subunit,
           putative / FTA, putative / protein farnesyltransferase,
           putative similar to farnesyltransferase alpha subunit
           [GI:2246442][Pisum sativum]
          Length = 326

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 401 LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV 508
           L+ L  T C     L  ++D LC  L+   +H+DSV
Sbjct: 248 LNVLSRTDCFHGFALSTLLDLLCDGLRPTNEHKDSV 283


>At2g39690.1 68415.m04869 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 498

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = -1

Query: 204 LIHAYI-FGLLFASVSILDMMHRLTLNIFAIAL-SLASNEYTLRAP 73
           ++HA++ +GL  +   +L +M++ +LN+  I L +LA   + LR P
Sbjct: 310 IMHAFLEYGLPSSHNRLLTLMNKASLNVGGIVLNALAIEHFVLRHP 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,589
Number of Sequences: 28952
Number of extensions: 322603
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)