Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060305.seq
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 33 0.030
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 28 1.1
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 28 1.1
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 28 1.1
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 28 1.5
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 26 4.5
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 26 5.9
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.9
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 26 5.9
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 7.9
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 7.9
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 33.5 bits (73), Expect = 0.030
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 501 PRRQVFCCSDCPHVFCAKCIKRNFGQSKILEIKCVDDWKCFKC-NPECLKHLRAVCW 668
P ++ C C HVF CI++ S +E + D W+C C + + L +CW
Sbjct: 206 PSTSIWSCGTCYHVFHLSCIRKWCKNS--IEQRNEDAWRCPYCQSNQTETSLHYLCW 260
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +3
Query: 528 DCPHVFCAKCIKRNFGQSKILEIKCVDDWKCFKCNPECLKHLRAVC 665
DCPHV C C + ++C KC C L H+ A C
Sbjct: 101 DCPHVLCTTC----GAIDDHISVRCPWTKKCMNCG--LLGHIAARC 140
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 28.3 bits (60), Expect = 1.1
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Frame = -3
Query: 691 CFTI-LKQAQHTARRCFKHSGLHLKHFQSS-THLISNIFDCPKFRLIHFAQKT*GQSEQQ 518
C +I LKQ + + K + F THLI+ FD PK++ ++ +
Sbjct: 14 CTSIDLKQRTEISTKATKLGAAYRSDFTKDVTHLIAGDFDTPKYKFAAKSRPDIKIMSSE 73
Query: 517 ------NTCLLGHTIDSKVQIHHHLSQTLHCCKRCDMSDTLVFVVKDESSHEINYVTKN 359
+ + G +D + + H TL C+ C L + + E S NYV K+
Sbjct: 74 WIPVLYESWVQGEDLDDGLLVDKHFLPTLFKCRVC-----LTNIGQPERSRIENYVLKH 127
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 143 SEIIKSEGACPAPEKP-ASSDENVQFPPLPEP 235
SE+ KS A PAP+KP + PP P+P
Sbjct: 8 SEVEKSSSASPAPQKPMIRVSKQWVVPPRPKP 39
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 478 QIHHHLSQTLHCCKRCDMSDTLVFVVKDESSHEINYVTK 362
Q+ HH+ L+ CKR D L+ ++ +S +++++TK
Sbjct: 595 QLQHHILNYLNDCKRLQDMDKLIPCIEYQSL-DLDFITK 632
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 266 SLRSPENLHQLVQVKAGIVHSHPKKPAFLVQDKP 165
S R P +L + V G++ H KP F+++++P
Sbjct: 153 SSRDPSSLPKGPVVIEGLLRQHTDKPRFMMKNEP 186
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +2
Query: 68 LQTLSKYKHFY--ILLMRIPNDLG 133
++T KYKHFY I ++ DLG
Sbjct: 586 IETFEKYKHFYHKICASQVEKDLG 609
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 472 HHHLSQTLHCCKRCDMSDTLVFVVKDESSHEIN 374
+H+ ++ + CC RC S VV D +S +N
Sbjct: 458 YHNFAKNV-CCLRCGASRATAAVVADHASGPVN 489
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 519 CCSDCPHVFCAKCIKRNFGQSKILEIKCVDDWKCFKCNPECL 644
CC CP+ F CI + + + D W C +C L
Sbjct: 277 CCETCPNSFHFTCIDPPIEEKNLPD----DAWYCNECKHHSL 314
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 80 SKYKHFYILLMRIPNDLGTTMSEIIKSEGACPAPEKPASSDENVQFPPLP 229
S ++H+ L R+ + + + +I CP P PA N+Q+ LP
Sbjct: 583 SMFEHYRKLARRLISHY-LSKTTLISLLVGCPVPAIPAEQLYNIQYAMLP 631
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 522 CSDCPHVFCAKCIKRNFGQSKILEIKC 602
C+ C H+FC CI G + + KC
Sbjct: 218 CTPCGHIFCNFCILSALGTTAATQ-KC 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,009
Number of Sequences: 5004
Number of extensions: 52932
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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