Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060305.seq
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 48 7e-06
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 31 0.66
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 29 3.5
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 29 4.6
11_06_0503 - 24374657-24375211 28 6.1
09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081 28 6.1
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203 28 8.1
>10_08_0259 +
16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 510 QVFCCSDCPHVFCAKCIKRNFGQSKILEIKCVDDWKCFKCNPECLKHLRAVC 665
Q+ CS C +FC C+ +NFG+ + E + V W+C C P L+HL + C
Sbjct: 544 QLQSCSSCKLLFCRNCLSKNFGEEGLSEAR-VAGWQCCCCLPSQLEHLISDC 594
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = +1
Query: 334 CTACDRHLGSSSRNLSRVKIHPLLRTLVCQTCHIFYNSGEFEKGDDGSELYCRWCGQGDK 513
CT C L N+ V HP+L ++C +C F + D S YC WC + ++
Sbjct: 491 CTICTEML-----NVPEVHRHPVLDVIICGSCR-FLVIEKNRLEDPVSGGYCTWCVKSEQ 544
Query: 514 YSVVLTVLMFFVRNVLN 564
+ + F RN L+
Sbjct: 545 LQSCSSCKLLFCRNCLS 561
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = +3
Query: 501 PRRQVFC--CSDCPHVFCAKCIKRNFGQSKILEIK-----CVDDWKCFKCNP 635
P V C C D VFCA CIK + + + E++ C + C +CNP
Sbjct: 179 PEEMVRCQLCGD--KVFCAACIKNKYPEMQQAEVRDKCPFCRNICNCTRCNP 228
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 555 CIKR-NFGQSKILEIKCVDDWKCFKCNPECLKHLRAV 662
CIK NF +SK+ E KC + F N E HL A+
Sbjct: 96 CIKLINFVRSKVAENKCWSCGQVFSSNSELCGHLHAL 132
>05_07_0173 + 28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 65 LLQTLSKYKHFYILLMRIPNDLG-TTMSEIIKSEGACPAPEK 187
LL+ L+ KH Y+ + P + TT ++K G C P K
Sbjct: 1671 LLEQLAVDKHIYVRVFDEPVPVAPTTFQSLLKQHGHCKEPSK 1712
>11_06_0503 - 24374657-24375211
Length = 184
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 131 GTTMSEIIKSEGACPAPEKPASSDENVQFP-PLPEPTDEDFQVILTKKKK 277
GT I S P+ E P+ + Q P P P +DE ++ KKKK
Sbjct: 7 GTCDQSQIPSTTMDPSDEAPSGKKSDGQIPAPAPVTSDEGKAPVMEKKKK 56
>09_04_0141 + 15036249-15036339,15036834-15037768,15037968-15038081
Length = 379
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +3
Query: 516 FCCSDCPHVFCAKCIKRNFG---QSKILEIKCVD 608
F C H FCA C+++ + +L I C D
Sbjct: 199 FAIPGCTHAFCASCVRQYIAAKVEENVLSIGCPD 232
>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
Length = 357
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 576 QSKILEIKCV-DDWKCFKCNPECLKHLRAVCW 668
QSK+ +++ + +DW+ + P LK L A+ W
Sbjct: 318 QSKVPDLRVMMEDWRSYLSLPPSLKRLSALAW 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,085
Number of Sequences: 37544
Number of extensions: 307458
Number of successful extensions: 1151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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