Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060305.seq
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 69 3e-12
SB_15447| Best HMM Match : C1_1 (HMM E-Value=0.11) 33 0.22
SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_27958| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_15879| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_389| Best HMM Match : zf-C2H2 (HMM E-Value=1.8e-29) 30 1.5
SB_27651| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.7
SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4) 29 3.6
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82) 29 4.7
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_34714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_23868| Best HMM Match : Gal_Lectin (HMM E-Value=1.4e-05) 28 8.3
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Frame = +1
Query: 265 EEEKEYIKTKFADLNTITSQ-----RLHCTACDRHLGSSSRNLSRVKIHPLLRTLVCQTC 429
E++K K K AD + + R+ CTAC RH+ S + R HP L LVC+ C
Sbjct: 15 EKKKSKKKKKVADSDVSMDEDGLPKRVTCTACGRHINPSHGKILR---HPTLNVLVCKKC 71
Query: 430 HIFYNSGEFEKGDDGSELYCRWCGQG 507
+ +YNSG F + + G E CRWCG G
Sbjct: 72 NQYYNSGPFTRDEYGIEEQCRWCGDG 97
Score = 44.4 bits (100), Expect = 9e-05
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 513 VFCCSDCPHVFCAKCIKRNFGQSKILEIKCVDD---WKCFKC 629
+ CC C FC CIKRN G++ + E+ D W CF C
Sbjct: 100 LICCDKCEKAFCQPCIKRNCGKAYLKEVMNAPDDYHWNCFSC 141
>SB_15447| Best HMM Match : C1_1 (HMM E-Value=0.11)
Length = 316
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 495 VWPRRQVFCCSDCPHVFCAKCIKRNFGQSKILEIK----CVDDW-KCFKCNPECLKHLRA 659
VW ++ C++C HVF KC R + S E+K VDD F C C + LR
Sbjct: 213 VWCSSAIWSCTNCFHVFHLKC-ARKWATSATSEVKGEYDIVDDHVGYFSCEDRC-ERLRN 270
Query: 660 VCW 668
CW
Sbjct: 271 -CW 272
>SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 262 NEEEKEYIKTKFADLNTITSQRLHCTACDRHLGSSSRNLSRVKIHPLLRTLVCQTC 429
N+E + K + + RL CT C R S S S ++IH + + C+ C
Sbjct: 344 NKEGEPIYKFTPENKGNVVPGRLKCTLCRRGFNSRSNLRSHMRIHTMEKPFQCKFC 399
>SB_27958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 442 NSGEFEKGDDGSELYCRWCGQG-DKYSVVLTVLMFFVRNVLNGI 570
N G +GDDG + YC G G D + V++F +++ +G+
Sbjct: 115 NDGSSGEGDDGGDSYCNKSGSGDDDDNDWFVVMVFLIKDTASGL 158
>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Frame = +1
Query: 322 QRLHCTACDRHLGSSSRNLSRVKIHPLLRTLVCQTCH-IFYNSGEF----EKGDDGSELY 486
Q + C C + LGS + +H + C C F G+ + ++G + +
Sbjct: 371 QDVECPTCGKSLGSKTDLNRHAVVHSGEKPFKCTICSKAFSQKGDLTRHSQNHENGKKFF 430
Query: 487 CRWCGQG----DKYSVVLTV 534
C++C +G D Y+V L +
Sbjct: 431 CKFCAKGFNRKDVYNVHLRI 450
>SB_15879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Frame = +3
Query: 546 CAKCIKRNFGQSKILEI-------KCVDDWKCFKCNPECLKHLR 656
C KCI N+ + L I KC + KCF N ++HLR
Sbjct: 74 CGKCITSNYSLKEHLRIHSGEKPLKCYECGKCFSHNSSLVEHLR 117
>SB_389| Best HMM Match : zf-C2H2 (HMM E-Value=1.8e-29)
Length = 383
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 319 SQRLHCTACDRHLGSSSRNLSRVKIHPLLRTLVCQTCH 432
++R C CD+ G SS ++ H R CQ C+
Sbjct: 260 TKRFQCVHCDKSFGKSSHLRDHIRTHTGDRPFRCQYCN 297
>SB_27651| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 280
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Frame = +1
Query: 247 FSGDLNEEEKEYIKTKFADLNTITSQR---LHCTACDRHLGSSSRNLSRVKIHPLLRTLV 417
F D+ E+ + T A L+T ++ C C R GS+S +K H +
Sbjct: 145 FKCDICEKRVTRMTTLKAHLSTHYFKKPANFKCELCKRSFGSASGLRQHIKYHAEKKPHK 204
Query: 418 CQTC-HIFYNSGEFEKG---DDGSELY-CRWCGQ 504
C+ C FY G+ K G + Y C CG+
Sbjct: 205 CKQCFKEFYTRGDLTKHLRIHSGEKPYNCDRCGR 238
>SB_54930| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=0.4)
Length = 365
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 179 PEKPASSDENVQF-PPLPEPTDEDFQVILTKKKKNISK 289
P KP + +N Q+ PP E +ED + I+ ++KK++ +
Sbjct: 257 PPKPVA--QNFQYNPPKVEAAEEDLKAIMAQRKKSVKQ 292
>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
Length = 896
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = +2
Query: 20 KITALISLFSLDD*VLLQTLSKYKHFYILLMRIPNDLGTTMSEIIKSEGACPAPEKPASS 199
++ AL+ +L V +Q ++ + Y + R+ G + + + + PAP
Sbjct: 780 RLRALLEDSTLPPDVRIQRYAQLYNEYRAMGRLAQLPGASRAAVAAPQPQ-PAPLPEPEL 838
Query: 200 DENVQFPPLPEPTDEDFQVILTKKKK 277
D ++ PPL P +L KKK+
Sbjct: 839 DLDLPVPPLQTPRKRPLMTLLAKKKR 864
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 278 SFSSSLRSPENLHQLVQVKAGIVHSHPKKPAFLV 177
S S+S+ P NLH V + + + P P FL+
Sbjct: 887 SNSTSVNEPSNLHNDVNILPSTISTRPPVPPFLI 920
>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 107 LMRIPNDLGT-TMSEIIKSEGACPAPEKPASSDENVQFPPLPEPTD 241
LM+I + + T + I++ P++P+ DE + PP+P P++
Sbjct: 71 LMQIASPTASQTFTPILQPSYQPTTPQQPSLLDEPIVTPPIPSPSE 116
>SB_34714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -3
Query: 496 TIDSKVQIHHHLSQTLHCCKRCDMSDTLVFVVKDESSHEINYVTK 362
T+DSK+ + LH + D+S T++ ++ SS++ Y+T+
Sbjct: 32 TMDSKI-----IKSLLHTSRETDLSVTVITALRHSSSYKAKYLTQ 71
>SB_23868| Best HMM Match : Gal_Lectin (HMM E-Value=1.4e-05)
Length = 318
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 173 PAPEKPASSDENVQFPPLPEPTDEDFQVILTKKKK 277
P PE D ++ PPL P +L KKK+
Sbjct: 101 PEPEPEPEPDLDLPVPPLETPRKRPLTTLLAKKKR 135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,288,795
Number of Sequences: 59808
Number of extensions: 397603
Number of successful extensions: 1562
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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