Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060305.seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical ...    32   0.45 
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    31   0.59 
AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL021483-7|CAA16344.3|  218|Caenorhabditis elegans Hypothetical ...    30   1.8  
U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical p...    29   2.4  
AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF016683-9|AAB66197.1|  299|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z92831-2|CAB07368.2|  861|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL117195-4|CAB55010.1|  571|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF078790-10|AAC26931.1|  197|Caenorhabditis elegans Hypothetical...    28   7.3  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U97193-14|AAB52442.2|  381|Caenorhabditis elegans Ring finger pr...    27   9.6  
AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical
           protein Y38F1A.2 protein.
          Length = 283

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 525 SDCPHVFCAKCIKRNFGQSKILEIKC 602
           +DC H+FC +CI + + QSK +   C
Sbjct: 118 TDCGHIFCCECIIQYWQQSKAIVTPC 143


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
 Frame = +2

Query: 149 IIKSEGACPAPEKPASSDENVQF--PPL-----PEPTDEDFQVILTKKKKNIS 286
           ++ SE + PAP  PA S E +    PP+     P  ++  FQVI T++ KN+S
Sbjct: 242 VVLSEPSTPAPVAPAPSIETLTSTSPPVTQQLAPSLSEPTFQVIQTEESKNMS 294


>AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical
           protein C27A12.2 protein.
          Length = 625

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 319 SQRLHCTACDRHLGSSSRNLSRVKIHPLLRTLVCQTCHIFYN 444
           +Q  HC  C++H+   S+    ++ H   +  VC  C+I ++
Sbjct: 68  AQIYHCVQCNKHIKYPSKITEHIRKHTGEKPNVCSICNISFS 109


>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +2

Query: 140 MSEIIKSEGACPAPEKPASSDENVQFPPLPEPTDEDFQVILTKKKKNISK 289
           ++E  +S+ A     +  S   NVQ PP+P P+D+    +L+K  ++++K
Sbjct: 818 VAESFRSDSAASFNTRTGSFRPNVQPPPVPRPSDD----VLSKLNEDLAK 863


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +2

Query: 140 MSEIIKSEGACPAPEKPASSDENVQFPPLPEPTDEDFQVILTKKKKNISK 289
           ++E  +S+ A     +  S   NVQ PP+P P+D+    +L+K  ++++K
Sbjct: 818 VAESFRSDSAASFNTRTGSFRPNVQPPPVPRPSDD----VLSKLNEDLAK 863


>AL021483-7|CAA16344.3|  218|Caenorhabditis elegans Hypothetical
           protein Y38H8A.5 protein.
          Length = 218

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
 Frame = +1

Query: 316 TSQRLH-CTACDRHLGSSSRNLSRVKIHPLLRTLVCQTC-HIFYNSGEFEK----GDDGS 477
           T  + H C  C +    SS   + V+IH   +  VC+ C   F+ +G ++      +D  
Sbjct: 103 TDSKPHKCKTCGKCFNRSSTLNTHVRIHQGFKPFVCEICGKGFHQNGNYKNHRLTHEDTK 162

Query: 478 ELYCRWCGQGDKYSVVLTVLMF 543
           +  C  C +    S  L   MF
Sbjct: 163 KFSCSICSRAFHQSYNLAFHMF 184


>U97193-12|AAB52441.1|  283|Caenorhabditis elegans Hypothetical
           protein C06A5.8a protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = +3

Query: 531 CPHVFCAKCIK--RNFGQSKILEI-KCVDDWKC 620
           C H FC +CIK  + +G S  LE   C  + KC
Sbjct: 57  CGHTFCTECIKTMQKYGNSAYLECPSCRAETKC 89


>AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical
           protein Y54E5B.2 protein.
          Length = 861

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 523 QQNTCLLGHTIDSKVQIHHHLSQTLHCCKRCD 428
           + N CLL H I SK+   H LS  +  C + D
Sbjct: 5   EDNPCLLDHLIQSKIAEKHLLSGKIITCAKFD 36


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -2

Query: 305 KSANLVLIYSFSSSLRSPENLHQLVQVKAGIVHSHPKKPAFLVQ 174
           K+A+L LI   S+ L S + LH    +K  I+H+  KK AF+V+
Sbjct: 488 KTASLYLIDEPSAYLDSEQRLHAAKVIKRFIMHA--KKTAFVVE 529


>AF016683-9|AAB66197.1|  299|Caenorhabditis elegans Hypothetical
           protein K09F6.7 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 531 CPHVFCAKCIKRNFGQSKIL 590
           C H  C  CIK+  G SKI+
Sbjct: 27  CSHTLCEGCIKKMLGNSKIV 46


>Z92831-2|CAB07368.2|  861|Caenorhabditis elegans Hypothetical
           protein F22G12.4 protein.
          Length = 861

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 310 TITSQRLHCTACDRHLGS--SSRNLSRVKIHPLLRTLVCQTCHIFYNSG 450
           ++TS++ HC  C RH+ S  S   +   K     R  VC  C    ++G
Sbjct: 808 SLTSRKHHCRHCGRHVCSKCSETTMPIAKYGEEKRVRVCDVCAHVISTG 856


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +1

Query: 595 LNVLMIGNVSSAILNA*NTCVLY---VGLVSI 681
           ++ ++IGN+S A+LN    C+LY   +G VS+
Sbjct: 611 VSTIIIGNLSVAVLNFIAVCILYASTIGTVSL 642


>AL117195-4|CAB55010.1|  571|Caenorhabditis elegans Hypothetical
           protein Y57A10A.5 protein.
          Length = 571

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 173 PAPEKPASSDENVQFPPLPEPTDEDF 250
           P PE P    + V+  P PEP D +F
Sbjct: 353 PIPEDPPYESDEVEGQPKPEPIDFEF 378


>AF078790-10|AAC26931.1|  197|Caenorhabditis elegans Hypothetical
           protein F36H12.5 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 65  LLQTLSKYKHFYILLMRIPNDLGTTMSEIIKSEGACPAPEKPASSDENVQFPPLPEPTDE 244
           ++  +  Y  F I+LM +   +G   S+  K + A P P    SS+  V  P  P P  E
Sbjct: 1   MIHLVCAYHIFAIILMSMTVSVGCK-SKAKKPKAAAPNPISSISSNSKVAPPASPPPPPE 59


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 316 TSQRLH-CTACDRHLGSSSRNLSRVKIHPLLRTLVCQTC 429
           T +R H C  CD+   S+S   + +++H   +   C  C
Sbjct: 559 TGERPHRCDICDKRFSSTSNLKTHLRLHNGQKPYTCDVC 597


>U97193-14|AAB52442.2|  381|Caenorhabditis elegans Ring finger
           protein protein 1 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 531 CPHVFCAKCIK--RNFGQSKILE 593
           C H FC +CI+  +N+G S  LE
Sbjct: 41  CGHTFCTECIRNVQNYGNSPHLE 63


>AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical
           protein F33E11.6b protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +3

Query: 510 QVFCCSDCPHVFCAKCIK---RNFGQSKILEIKCVDDWKCFKCN-PE 638
           ++ CC+ C   +  +CI+   R     K  E  CVD   C  CN PE
Sbjct: 344 EMICCATCKIAYHPQCIEMPERMAALVKTYEWSCVDCRLCSICNKPE 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,590,744
Number of Sequences: 27780
Number of extensions: 302551
Number of successful extensions: 1356
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)