Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060305.seq
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 42 4e-04
At5g38690.1 68418.m04678 expressed protein 35 0.045
At1g67270.1 68414.m07656 hypothetical protein 35 0.045
At1g67780.1 68414.m07734 hypothetical protein 32 0.41
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9... 31 0.55
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 31 0.55
At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger) fa... 31 0.96
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 31 0.96
At4g01740.1 68417.m00226 DC1 domain-containing protein similar t... 29 2.2
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom... 29 3.9
At2g16190.1 68415.m01855 hypothetical protein 29 3.9
At5g56620.1 68418.m07069 no apical meristem (NAM) family protein... 28 5.1
At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa... 28 5.1
At5g62830.1 68418.m07886 F-box family protein-related similar to... 28 6.8
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 6.8
At3g43180.1 68416.m04557 zinc finger (C3HC4-type RING finger) fa... 27 8.9
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 27 8.9
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 27 8.9
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary
28614
Length = 1457
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 522 CSDCPHVFCAKCIKRNFGQSKILEIKCVDDWKCFKCNPECLKHL 653
C C +FCA CIKRN G+ + E + W C C+P L+ L
Sbjct: 507 CRTCEKLFCASCIKRNIGEEYMSEAQS-SGWDCCCCSPIPLQRL 549
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = +1
Query: 319 SQRLHCTACDRHLGSSSRNLSRVKIHPLLRTLVCQTCHIFYNSGEFEKGDDGSELYCRWC 498
+ CTAC++ V HPLL +VC C K DD E +C WC
Sbjct: 447 ANNFRCTACNKVA-------VEVHSHPLLEVIVCMDCKRSIED-RVSKVDDSLERHCEWC 498
Query: 499 G 501
G
Sbjct: 499 G 499
>At5g38690.1 68418.m04678 expressed protein
Length = 572
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 531 CPHVFCAKCIKRNFGQSKILEIKCVDDWKCFKCNPEC 641
CP C KCI +G++ E+ DW C KC C
Sbjct: 55 CPIKLCTKCILNRYGEN-AQEVALKKDWICPKCRGNC 90
>At1g67270.1 68414.m07656 hypothetical protein
Length = 506
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 531 CPHVFCAKCIKRNFGQSKILEIKCVDDWKCFKCNPECL 644
CP FC KC+ +G++ E+ +DDW C C C+
Sbjct: 50 CPIKFCYKCLSIRYGEN-AEEVAKLDDWICPLCRGICI 86
>At1g67780.1 68414.m07734 hypothetical protein
Length = 515
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 531 CPHVFCAKCIKRNFGQSKILEIKCVDDWKCFKCNPEC 641
C FC KC+ +G++ E+ +DDW C +C C
Sbjct: 58 CTINFCHKCLINRYGENAE-EVAKLDDWICPQCRGIC 93
>At5g11490.1 68418.m01341 adaptin family protein similar to
SP|Q9WV76 Adapter-related protein complex 4 beta 1
subunit (Beta subunit of AP- 4) {Mus musculus},
beta-adaptin Drosophila 1 {Drosophila melanogaster}
GI:434902; contains Pfam profile: PF01602 Adaptin N
terminal region
Length = 841
Score = 31.5 bits (68), Expect = 0.55
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 625 LKHFQS-STHLISNIFDCPKFRLIHFAQKT*GQSEQQNTCLLGHTIDSKVQI 473
+KH QS S H I++ P F+ FAQK S C++ +T +K QI
Sbjct: 764 IKHMQSHSIHCIASGGQSPNFKFFFFAQKESEPSNYLTECII-NTSSAKAQI 814
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 31.5 bits (68), Expect = 0.55
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = +1
Query: 259 LNEEEKEYIKTKFADLNTIT---SQRLH-CTACDRHLGSSSRNLSRVKIHPLLRTLVCQT 426
L+E++ Y + KF + T+ SQR + C CD L + +L R K HPL + +
Sbjct: 391 LHEKKTIYKRDKFCEACTLPVMISQRFYGCMQCDFVLDETCASLPRKKNHPLHKHPLNLH 450
Query: 427 CHIFYNSGEFEKGDDGSELY-CRWCGQ 504
S KG +++ C CG+
Sbjct: 451 TLPLGESAMINKGATSKDIFKCIGCGR 477
>At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 348
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 510 QVFCCSDCPHVFCAKCIKRNFGQSKILE 593
Q+FC C H FC+ C++R+ + ++LE
Sbjct: 112 QMFCVGKCRHRFCSDCMRRHI-EVRLLE 138
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +3
Query: 513 VFCCSDCPHVFCAKCIKR----NFGQSKILEIKCVDDWKCFKCNPECLKHLRAVCWACF 677
++ CS C +F CIKR + E D+W+C C L + + + CF
Sbjct: 236 IWSCSSCYSIFHINCIKRWARAPTSVDLLAEKNQGDNWRCPGCQSVQLTSSKEISYRCF 294
>At4g01740.1 68417.m00226 DC1 domain-containing protein similar to
T15B16.6 similar to A. thaliana CHP-rich hypothetical
proteins encoded by T10M13, GenBank accession number
AF001308
Length = 652
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +3
Query: 501 PRRQVFCCSDCPHVFCAKCIKRNFGQSKILEIKCVDDWKCFKCN--PECLKH 650
P ++C +FC C K +G +E +C + CF C P +KH
Sbjct: 460 PDHPLYCILPYGKIFCNGCYKFKYGMLVCVEYEC-NHLICFNCATLPPVVKH 510
>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 671
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 173 PAPEKPASSDENVQFPPLPEPTDEDF 250
P+P PA SD+N P P+P + +
Sbjct: 453 PSPPPPAGSDQNTHIYPQPQPRFDSY 478
>At2g16190.1 68415.m01855 hypothetical protein
Length = 303
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -3
Query: 463 LSQTLHCCKRCDMSDTLVFVVKDESSHEINYVTKNRDD 350
+S +HC K CD +DT+ + ++++ S Y+ N+++
Sbjct: 175 ISGQVHC-KTCDRTDTVEYNLEEKFSELYGYIKVNKEE 211
>At5g56620.1 68418.m07069 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 386
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 493 IDSKVQIHHHLSQTLHC 443
IDSK++ HHHL + HC
Sbjct: 9 IDSKLEEHHHLCGSKHC 25
>At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF01485:IBR domain
Length = 384
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 513 VFCCSDCPHVFCAKCIKRN 569
+F C H+FC++C+KR+
Sbjct: 166 MFYIDQCGHMFCSECVKRH 184
>At5g62830.1 68418.m07886 F-box family protein-related similar to
F-box protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains TIGRFAM TIGR01640 : F-box protein
interaction domain
Length = 204
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 501 PRRQVFCCSDCPHVFCAKCIKRNFG 575
P + VFC H C +CI R FG
Sbjct: 175 PDKSVFCGIQAAHFQCYRCIPRLFG 199
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +1
Query: 259 LNEEEKEYIKTKFADLNTIT---SQRLH-CTACDRHLGSSSRNLSRVKIHPLLRTLVCQT 426
L+E++ K KF + T+ SQR + C CD L + +L R K HPL + +
Sbjct: 352 LHEKKTIGGKDKFCEACTLPVMISQRYYGCMQCDFVLDETCASLPRKKNHPLHKHPLNLH 411
Query: 427 CHIFYNSGEFEKGDDGSELY-CRWCGQ 504
S KG +++ C CG+
Sbjct: 412 ILPLGESAMINKGATSKDIFQCIGCGR 438
>At3g43180.1 68416.m04557 zinc finger (C3HC4-type RING finger)
family protein contains Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 191
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +3
Query: 510 QVFCCSDCPHVFCAKCIKRNFGQSKILE 593
Q++ + C H FC C+K++ +S++LE
Sbjct: 71 QMYSVALCGHQFCVDCVKQHI-ESRLLE 97
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 501 PRRQVFCCSDCPHVFCAKCIKRNFGQSKI 587
P + S+C H FC CI+ F ++
Sbjct: 22 PFKDATTISECLHTFCRSCIRNKFINERV 50
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 316 TSQRLHCTACDRHLGSSSRNLSRVKIHPLLRTLVCQTCHIFYNSGEFEKGDDGSE 480
T LHC CD + S L R + PL R + + +++S + GD+ SE
Sbjct: 51 TKYHLHCDTCDYDIHKSCYLLPRCRSMPLTRPHTLREGNDYHSSCD-TCGDEVSE 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,443
Number of Sequences: 28952
Number of extensions: 268098
Number of successful extensions: 1114
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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