Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060304.seq
         (631 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   3.7  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   3.7  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   6.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.5  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 108 TSPRSPQT*RVSSKASTPAVSVTSTPMRRLCFRLLKTSPLRRPRSLYS 251
           ++PRS      SS +     S  S+   ++  RLL  +P+      YS
Sbjct: 152 STPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSANQWYS 199


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 108 TSPRSPQT*RVSSKASTPAVSVTSTPMRRLCFRLLKTSPLRRPRSLYS 251
           ++PRS      SS +     S  S+   ++  RLL  +P+      YS
Sbjct: 143 STPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSANQWYS 190


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 518 YFNIDVSQIDLRRPLQVLF 574
           +F ID    + R+P+++LF
Sbjct: 301 FFEIDRINAESRKPIRILF 319


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 384 SH*AEAHGNVREEPAPHKGRH*ARXISLNHYFITVT 491
           +H  E + +V+EEP     R       LNH+  +VT
Sbjct: 40  THNNEMYHSVKEEPIYESCRFSINQPYLNHFDNSVT 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,036
Number of Sequences: 336
Number of extensions: 2892
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)