Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060304.seq
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.32
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 1.7
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.2
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.2
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.0
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 5.2
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 6.8
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 6.8
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 6.8
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 6.8
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 6.8
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 6.8
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 9.0
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 9.0
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.9 bits (64), Expect = 0.32
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +3
Query: 276 PAEAHRDSGEEPASGQRCYRSGEGEEQIPERHRELRSH*AEAHGNVREEPAPHKG 440
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 342 EGEEQIPERHRELRSH*AEAHGNVREEPAPHKGRH 446
E EE+ PE RE SH +E+ GN E + H
Sbjct: 794 EEEEEEPEERREESSHFSESSGNNEFEETEQEYTH 828
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.2
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 44 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 223
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 224 TEKTQKSLFD 253
+KS+ D
Sbjct: 82 NITNKKSVTD 91
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 310 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 429
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 228 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 97
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +2
Query: 95 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDVSRS 265
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ D+ R+
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQVFDDLKRT 64
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 343 KEKNKFLNGIENFDPTKLKHTETCEKN 423
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 237 WVFSVATSSADGSTIFSLVSTSRRQL 160
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 237 WVFSVATSSADGSTIFSLVSTSRRQL 160
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 237 WVFSVATSSADGSTIFSLVSTSRRQL 160
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 237 WVFSVATSSADGSTIFSLVSTSRRQL 160
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 240 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 142
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +2
Query: 17 AECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 196
A+ L +SS +Y +++ + ++ + K A ++ TS D +N K
Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783
Query: 197 VLPSAEDVATEKT 235
+LP+A+DV+++ +
Sbjct: 784 ILPNADDVSSKNS 796
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 283 KHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETCEKNPL 429
+H E+ E P+ ++ + EKEK+ + +E+ P H T +K+P+
Sbjct: 801 RHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPV 853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,740
Number of Sequences: 5004
Number of extensions: 49799
Number of successful extensions: 207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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