Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060304.seq
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 31 0.57
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 30 1.3
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.7
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 3.0
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 7.0
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 7.0
01_06_0241 - 27813076-27813622,27813695-27814125 28 7.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 9.3
04_04_1085 - 30719921-30719960,30720206-30720351,30720469-307205... 27 9.3
03_06_0066 + 31409676-31410034,31412237-31412351,31412482-314125... 27 9.3
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 27 9.3
01_01_0661 - 5036592-5037428,5037529-5037957,5038067-5038261,503... 27 9.3
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 240 SLYSTYREV*FEPAEAHRDSGEEPASGQRCYRS-GEGEEQIPERHRELRS 386
++Y Y E+ AE H+ G P + + +S GEG+ ++PE++R S
Sbjct: 496 TIYCVYSEL---AAEVHKGRGRIPVADYKIVKSFGEGDAELPEQNRSCYS 542
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 135 RVSSKASTPAVSVTSTPMRRLCFR 206
+VSS++S+P SVT+ +R +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 128 DLKSQLEGFNTSCLRDVDTNEKIVL 202
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 90 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 182
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 104 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 196
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 104 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 196
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 273 EPAEAHRDSGEEPASGQRCYRSGEGEEQIPERHRELRS-H*AEAHGNVREEPAPHK 437
EP H + ++ R +R+ ++ + HR RS H A + V + H+
Sbjct: 23 EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 39 PLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMRR 194
P P I +++PAP PP ++S R+P SSK P P R
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANR 702
>04_04_1085 -
30719921-30719960,30720206-30720351,30720469-30720546,
30720649-30720715,30720948-30721090,30721504-30721535,
30721769-30722168,30722540-30722601,30722716-30722892,
30723078-30723201,30723590-30723760
Length = 479
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 77 CSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVL--PSAEDVATEKTQKSLF 250
C + DT +K PK+ +D+K Q+E + + + + + +V+ + +DV +E+ +
Sbjct: 355 CDIEDT-LIKSNPKLTSDVKVQVEAEDMAMMLQLKPEDFVVVLDENGKDVTSEQVADLVG 413
Query: 251 DVSRS 265
D +
Sbjct: 414 DAGNT 418
>03_06_0066 +
31409676-31410034,31412237-31412351,31412482-31412552,
31412942-31413036,31414143-31414214,31414293-31414456,
31414725-31414760
Length = 303
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 276 PAEAHRDSGEEPASGQRCYRSGEGEEQIPERHRE 377
P E ++G E A G+ GEGEE+ E E
Sbjct: 70 PKEEEPETGAEAAGGEPGGAEGEGEEEEEEEEEE 103
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 310 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 402
P ++ E EKEK K +N + P KLKH
Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519
>01_01_0661 -
5036592-5037428,5037529-5037957,5038067-5038261,
5038919-5038942,5039436-5039780
Length = 609
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 236 GSSQWRRLQQTEAQSSHWCRRHGD 165
GSS+WRRL EA + + RH D
Sbjct: 406 GSSEWRRLCDDEAHMAAFPNRHFD 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,705,701
Number of Sequences: 37544
Number of extensions: 357517
Number of successful extensions: 1114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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