Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060304.seq
(631 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 73 2e-13
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 37 0.012
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 32 0.44
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 31 0.58
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 1.8
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 29 2.4
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 29 3.1
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 29 4.1
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 29 4.1
SB_39692| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 28 5.4
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 28 7.2
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 27 9.5
SB_10162| Best HMM Match : Peptidase_M43 (HMM E-Value=4.1) 27 9.5
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_37689| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +1
Query: 235 PEVF--IRRIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 408
PEV + + FD+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQ 731
Query: 409 TCEKNPLPTKDVIEQEXSA 465
T EKNPLP I QE ++
Sbjct: 732 TEEKNPLPDAKTIAQEKAS 750
Score = 70.5 bits (165), Expect = 1e-12
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +1
Query: 235 PEVFIRRIE--KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 408
PEV R E KFD+S+LKH ET+EK +P KD IEAE ++ +++FD +KLKH
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSR--AEVKSFDHSKLKHVV 579
Query: 409 TCEKNPLPTKDVIEQE 456
T EKNPLPT + +E
Sbjct: 580 TQEKNPLPTPQTLHEE 595
Score = 70.1 bits (164), Expect = 1e-12
Identities = 34/67 (50%), Positives = 42/67 (62%)
Frame = +1
Query: 256 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPT 435
++ F+ S+L+H ET+EKN LP KD I EK F +G+E F KLKH ET EKNPLP
Sbjct: 454 VKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVETLEKNPLPD 512
Query: 436 KDVIEQE 456
I E
Sbjct: 513 AQNIRAE 519
Score = 69.3 bits (162), Expect = 2e-12
Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Frame = +1
Query: 247 IRRIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLN--GIENFDPTKLKHTETCEK 420
+ + KFD++ LKH +T+EKN LP + I+ E + ++F + +++F+ +KL+H ET EK
Sbjct: 411 VSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEK 470
Query: 421 NPLPTKDVIEQE 456
N LPTKD I E
Sbjct: 471 NTLPTKDTIADE 482
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/67 (41%), Positives = 46/67 (68%)
Frame = +1
Query: 256 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPT 435
+ FD ++LKH TQEK+ +P ++ I+ E ++ +++FD +KLKH ET EKNPLP+
Sbjct: 607 VASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPS 664
Query: 436 KDVIEQE 456
V+++E
Sbjct: 665 AAVLKEE 671
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +2
Query: 95 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDVS 259
PS +D+ + A D +++++ F+ S L+ V+T EK LPSA + E + L DVS
Sbjct: 627 PSQEDIKEEAVDSRAEVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVS 681
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +2
Query: 110 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 229
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 110 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 229
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 98 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFDVSR 262
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+ S+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFENSK 388
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 31.9 bits (69), Expect = 0.44
Identities = 21/48 (43%), Positives = 28/48 (58%)
Frame = -1
Query: 235 GLLSGDVFSRRKHNLLIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 92
GLL+GD+F R K N+LI VD T G + FEL + + E+ GS
Sbjct: 74 GLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -1
Query: 235 GLLSGDVFSRRKHNLLIGVDVTETAGVEAFEL 140
GLL+GD+F R K N+LI VD T G + FEL
Sbjct: 51 GLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 31.5 bits (68), Expect = 0.58
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +1
Query: 265 FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDV 444
+D Q K E PD+D +E E+E NG+E+ D K + PT DV
Sbjct: 839 YDVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDV 895
Query: 445 IEQE 456
Q+
Sbjct: 896 ETQQ 899
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 80 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 226
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 477 FITVTRKCISLYRRILILM*VRSICVVHYKFYFCFCTMGNTAWAMGDV 620
F T +SL R ++ +R IC VH FY+C C + A G +
Sbjct: 39 FRLATHVILSLESRDTLVAVLR-ICSVHLDFYYCTCVWSSMAGVPGSL 85
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 28 ESSIPFLIKNILIHNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 162
E S+PF N N ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 101 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE-KTQKSLFDVS 259
L DL +V +LKS+ EG CL D++ + DV E + KS +S
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSIS 1177
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 283 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 420
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 303 EEPASGQRCYRSGEGEEQIPERHRELRSH*AEAHGNVREEP 425
EEP+ + +G +E+ E RE R H + V+EEP
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 253 RIEKFDSSQLKHTETQEKNPLP 318
R+E+F S +H T +KNPLP
Sbjct: 207 RLEQFSSQTGRHINTTKKNPLP 228
>SB_39692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 561 YKFYFCFCTMGNTAWAMGD 617
+ FYF C GN W GD
Sbjct: 45 HSFYFAKCVHGNNVWVFGD 63
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 270 FEPAEAHRDSGEEPASGQRCYRSGEGE 350
FEP E H DSG+E Y EG+
Sbjct: 266 FEPMEIHDDSGDEDVDSDDDYDDREGD 292
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 223 H*EDPEVFIRRIEKFDSSQLKHTETQEKNPLPDKDAIEA 339
H +P+ + E FDS LKH ++ N +P+ + +
Sbjct: 370 HEHEPKQDLYHHEDFDSYSLKHERVKQSNTVPNPSKVRS 408
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 292 ETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEXSA 465
+T E++P DK + L+G+ +FD K +H + K IEQ+ ++
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEHAKLIPKYHKIMIKTIEQDPTS 318
>SB_10162| Best HMM Match : Peptidase_M43 (HMM E-Value=4.1)
Length = 647
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 550 QIDLTYINIKIRRYSEIHLRVTVIK*WFKLXSLAQ 446
Q+D Y+ +I +S +H V++ WFK S Q
Sbjct: 107 QMDPMYVVPEIGAFSSMHYEFPVVREWFKTSSEVQ 141
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 229 EDPEVFIRRIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 357
++ +F++R+ K SQ + E ++P P + A KE+ +
Sbjct: 1970 DERTIFVKRLSKESMSQFEQEEPTRQSPSPRRKISPALKEEKR 2012
>SB_37689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 202 KHNLLIGVDVTETAGVEAFELTLQVCGDLGEVFQGGSVTHGAGHCE 65
+H + + D+T + V EL V G QGG V H G CE
Sbjct: 128 RHIMKMNFDLTPGSSVPHTELNRVVKGWYELYGQGGIVAHKGGDCE 173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,044,483
Number of Sequences: 59808
Number of extensions: 405436
Number of successful extensions: 1275
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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