Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060304.seq
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    57   1e-08
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL031630-3|CAA20983.1|  140|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z70752-1|CAA94754.1|  410|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC024211-1|AAF36065.1|  252|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/70 (42%), Positives = 40/70 (57%)
 Frame = +1

Query: 247 IRRIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNP 426
           I  IE FDS++L  T  +EK  LP  D I+ EK+  +  + I NF    LK TET EKN 
Sbjct: 51  IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110

Query: 427 LPTKDVIEQE 456
           LP+   + +E
Sbjct: 111 LPSPTDVARE 120



 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 28/60 (46%), Positives = 38/60 (63%)
 Frame = +1

Query: 277 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 456
           +LK  ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QE
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = +1

Query: 253 RIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTET 411
           +I  F S  LK TET EKN LP    +  EK     L    +FD + L H ET
Sbjct: 91  KINNFPSENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139



 Score = 35.1 bits (77), Expect = 0.042
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 140 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD 253
           ++E F+++ L      EKIVLPSA+D+  EK    L D
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTD 90



 Score = 34.3 bits (75), Expect = 0.073
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 95  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDVSRSL 268
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT +      +S 
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQMAASFDKSA 133

Query: 269 I 271
           +
Sbjct: 134 L 134



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 98  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEK 232
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEK 45


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 33  FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMRRLCFRLL 212
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P R+      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 213 KTSPLRR 233
             +P+++
Sbjct: 76  TVTPIQQ 82


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +1

Query: 256 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPT 435
           IE+F     K T   ++N    ++  E++ E+  +LN I +F   +  H        LP+
Sbjct: 98  IEQFFGENQKSTRNSDQNAKNHEEDPESDDEETAYLNLIRSFKKEESMHDLKNASGKLPS 157

Query: 436 KDVIEQEXS 462
            +  E E S
Sbjct: 158 SN-CEDEIS 165


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 141 SSKASTPAVSVTSTPMRRLCFRLLKTSPLRRPRSLYSTYREV*FEPAEA 287
           S+ + TP +S +S P  RL F    ++    PR+  ++++ +   PA A
Sbjct: 58  STTSDTPKLSSSSAPRSRLSFTTPSSTSTNLPRTSITSHKTLYSSPAAA 106


>AL031630-3|CAA20983.1|  140|Caenorhabditis elegans Hypothetical
           protein Y38H6C.3 protein.
          Length = 140

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 247 IRRIEKFDSSQLKHTETQEKNPLPDK----DAIEAEKEKNKFLNGIENFDPTKLKHTETC 414
           ++ IE   +S+ K+ E   K P P+K    + ++ + E NK    I + DP + K     
Sbjct: 57  VKAIETASTSEQKNPEVVPKEPKPEKPRNPEELKKQNELNKIDLWIADEDPARRKQPLNL 116

Query: 415 EKNP 426
             +P
Sbjct: 117 HDHP 120


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 283 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 384
           KHTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


>Z70752-1|CAA94754.1|  410|Caenorhabditis elegans Hypothetical
           protein F25B3.2 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 23/79 (29%), Positives = 34/79 (43%)
 Frame = -1

Query: 292 RCASAGSNQTSRYVE*RLLGLLSGDVFSRRKHNLLIGVDVTETAGVEAFELTLQVCGDLG 113
           R +S  +N T+ +V  R+ G L   VFS   H  + G        +  F + +  C DLG
Sbjct: 255 RSSSPSNNTTNPFV--RVFGRLRASVFSDA-HPTVPG-----NCALGNF-IPVGTCSDLG 305

Query: 112 EVFQGGSVTHGAGHCESIY 56
           E   GG+       C  +Y
Sbjct: 306 ETIDGGTHESLCSECRGLY 324


>AC024211-1|AAF36065.1|  252|Caenorhabditis elegans Hypothetical
           protein Y76B12C.4 protein.
          Length = 252

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 23/75 (30%), Positives = 33/75 (44%)
 Frame = +1

Query: 229 EDPEVFIRRIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 408
           E+ E      EK    + +  +T EKN   DK+  EAEKE+ K     +     K K   
Sbjct: 61  EEKESEKEAAEKEKEKEKEKEKTHEKNEA-DKEEKEAEKEEEKEEKPPKEVTEEKEKEK- 118

Query: 409 TCEKNPLPTKDVIEQ 453
             E+    TKD +E+
Sbjct: 119 --EREKTKTKDELEE 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,564
Number of Sequences: 27780
Number of extensions: 287833
Number of successful extensions: 1105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)