Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060304.seq
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.7  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 80  SVSDTPSLKDLPKVATDLKS 139
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 225 LRRPRSLYSTYREV*FEPAEAHRDSGEEPASGQR 326
           LRR R L +T           H DSG   ++ QR
Sbjct: 248 LRRSRMLTATVNRNHLSGGTNHWDSGRRKSAAQR 281


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 128 DLKSQLEGFNTSCLRDVDTNEKIV 199
           +LKS L    + C++++ T ++I+
Sbjct: 21  ELKSGLHTVQSVCMKEIGTAQQII 44


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 2   GTSRVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDL 112
           GT  V EC    +P    I+      +V D P L+ +
Sbjct: 18  GTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQV 54


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 159 PAVSVTSTPMRRLCFRLLKTSPLRRPRSLYSTYR 260
           P +SV S        R     PLR P+ + S YR
Sbjct: 103 PMISVFSRQDIETIIRRNSRYPLRPPQEVISHYR 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,793
Number of Sequences: 438
Number of extensions: 3549
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)