Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060304.seq
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    31   0.48 
At2g02720.1 68415.m00214 pectate lyase family protein similar to...    31   0.63 
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    30   1.5  
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    30   1.5  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    29   2.5  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    29   3.4  
At3g28770.1 68416.m03591 expressed protein                             29   3.4  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    29   3.4  
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   4.4  
At3g57780.1 68416.m06436 expressed protein                             28   4.4  
At1g09470.1 68414.m01059 expressed protein ; expression supporte...    28   4.4  
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran...    27   7.8  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
 Frame = +3

Query: 18  LSARIFYPLPHQKYIDSQWPAP*VTLPP*KT----SPRSPQT*RVSSKASTPAVSVTSTP 185
           ++ R+  P P +  + S  PA  +  PP +     SP        ++   +P+ S  S P
Sbjct: 456 VAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSPSSLSPP 515

Query: 186 MRRLCFRLLKTSPLRRPRSLYSTYREV*FEPAEAHRDSGEEPASGQRCYRSGEGEEQIPE 365
            R+   ++L + P+RR RSL      V       H         G      G G+     
Sbjct: 516 GRK---KVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPSS 572

Query: 366 RHRELRS 386
           RH++ RS
Sbjct: 573 RHQKARS 579


>At2g02720.1 68415.m00214 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 455

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 283 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 456
           K    +E  P P+  +   + EK+ FLNG       K        KNP+P K  I  +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
            SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +1

Query: 277  QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQ 453
            Q+K  + +E+N    K+ +E  + + K    +E  +   +LK T   E+N    ++ IE 
Sbjct: 778  QIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKLREAIEL 837

Query: 454  EXSAXXXXXXXXXANVSR 507
            E            A + R
Sbjct: 838  EEKEKRLIEAFERAEIER 855



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +1

Query: 259  EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPT 435
            +K +  +LK T  +E+N    ++AIE E+++ + +   E  +   +LK     E+  +  
Sbjct: 811  QKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRL 870

Query: 436  KDVIEQE 456
            ++  E+E
Sbjct: 871  QEAKERE 877


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 68  TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 238
           T   S+ +  +  DLPK+  +  SQ E     + S    +DT E ++ P+AED   E   
Sbjct: 74  TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133

Query: 239 KS 244
            S
Sbjct: 134 SS 135


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
           domain PF04931: DNA polymerase V
          Length = 1306

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 289 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 384
           TE  E + LPD   ++ +K K + +N + N+D
Sbjct: 12  TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = +2

Query: 8   SRVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTN 187
           +R+A C     P   ++  F  + S S + SL+D+  ++ +LK  L+G  +     VDTN
Sbjct: 512 ARIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN 569

Query: 188 EKIVLPSAEDVATEK 232
                  AED A E+
Sbjct: 570 -----LDAEDRAAER 579


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 247 IRRIEKFDSSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKN 423
           +R  E+      K +E  EK    + KDA   E + NK L+  EN D  K +  E  +++
Sbjct: 768 VRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKED 827

Query: 424 PLPTKD 441
              +KD
Sbjct: 828 KEESKD 833


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
           TIGR01612: reticulocyte binding protein; contains
           TIGRFAM TIGR00864: polycystin cation channel protein;
           similar to fimbriae-associated protein Fap1
           [Streptococcus parasanguinis] (GI:3929312)
          Length = 1498

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 235 PEVFIRRIEKFD----SSQLKHTETQEKNPLPDKDAIEAEKEK 351
           P  F+ R+ ++D    + QLKH E Q      ++DA+ A+ +K
Sbjct: 815 PFYFLPRVPRYDDEKLAEQLKHAEEQVDQKTQNRDALRADIQK 857


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 232 LLSGDVFSRRKHNLLIGVDVTETAGVEAFELTLQVCGDLG 113
           ++ G+    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


>At3g57780.1 68416.m06436 expressed protein
          Length = 670

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 268 DSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE 417
           DSS+   TE +E  N L   D  E EKE++K L+ I +     +   ETCE
Sbjct: 72  DSSE--KTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPETCE 120


>At1g09470.1 68414.m01059 expressed protein ; expression supported
           by MPSS
          Length = 336

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 179 DTNEKIVLPSAEDVATEKTQKSLFDVSRSL 268
           + NEK+    A DVATEK  K L D+   L
Sbjct: 76  ELNEKVEQIRASDVATEKFVKELADIKSQL 105


>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein similar to
           N2,N2-dimethylguanosine tRNA methyltransferase [Homo
           sapiens] GI:11066198; contains Pfam profile PF02005:
           N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 599

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 238 EVFIRRIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 384
           E   +R ++ ++   K T    K  + +KDA EA KE+    NG+ N D
Sbjct: 45  EFLSKRKQEHEAKSSKRTRPASK--VIEKDASEASKEETPSENGMNNGD 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,344
Number of Sequences: 28952
Number of extensions: 272386
Number of successful extensions: 922
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)