Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060303.seq
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 112 2e-25
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337... 77 1e-14
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 68 8e-12
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 45 7e-05
01_05_0766 - 25026487-25027224 34 0.093
07_03_0928 - 22673127-22673579,22676103-22676326,22676412-226765... 28 8.1
07_01_1036 + 9021395-9021658,9024214-9024690 28 8.1
06_03_0107 + 16709543-16709640,16712555-16713408,16715051-167151... 28 8.1
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 112 bits (270), Expect = 2e-25
Identities = 53/103 (51%), Positives = 79/103 (76%)
Frame = +1
Query: 283 EAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETADYSIREE 462
+ +K+HQ +I S+K + D+S+R++A+DLLY MCD TNA+EIV+E+L YL TA++++REE
Sbjct: 356 DIIKRHQAQIITSLK-DPDISIRRRALDLLYGMCDVTNAKEIVEELLQYLNTAEFAMREE 414
Query: 463 MVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
+ +K AILAEK+A D DVI I AGD+VS+++ YRV+
Sbjct: 415 LSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWYRVV 457
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/81 (40%), Positives = 50/81 (61%)
Frame = +2
Query: 11 EPGVRGRLSECLETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACN 190
+PG R L E L+ I K V +NA +AVLFEA++L++H D+E ++ +
Sbjct: 268 DPGARRALFEVLQRILMGTDVV---KNVNKNNASHAVLFEALALVMHLDAEKEMMSQCVA 324
Query: 191 QLGQFLSNRETNLRYLALESM 253
LG+F++ RE N+RYL LE+M
Sbjct: 325 LLGKFIAVREPNIRYLGLENM 345
>06_01_0475 +
3375757-3375800,3375898-3376168,3376252-3376440,
3376816-3376989,3378039-3378218,3378565-3378719,
3379509-3379599,3380023-3380186,3380791-3380845,
3380944-3381066,3381160-3381255,3381706-3381833,
3382407-3382466,3382607-3382896,3383127-3383237,
3383318-3383395,3383487-3383659,3384192-3384296,
3385017-3385112
Length = 860
Score = 77.0 bits (181), Expect = 1e-14
Identities = 32/115 (27%), Positives = 73/115 (63%)
Frame = +1
Query: 247 INVHLATSEFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLA 426
+N+ + E +AV++H+ ++ +K + DVS+R++A++L+Y + + NA+ + +E++
Sbjct: 342 LNMLMKAMEVDTQAVQRHRATILECVK-DADVSIRKRALELVYLLVNDANAKSLTKELVD 400
Query: 427 YLETADYSIREEMVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
YLE +D ++++ K+ + EK++ D L D + + +AG+YV ++V + +I
Sbjct: 401 YLEVSDQDFKDDLTAKICSIVEKFSQDKLWYLDQMFKVLSLAGNYVKDDVWHALI 455
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/73 (36%), Positives = 43/73 (58%)
Frame = +2
Query: 35 SECLETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACNQLGQFLSN 214
++C E + N +K + NA NA+L+E + I+ ++ L V A N LG+FLSN
Sbjct: 274 ADCSEFV-NDILAQVATKTESNKNAGNAILYECVETIMGIEATSGLRVLAINILGRFLSN 332
Query: 215 RETNLRYLALESM 253
R+ N+RY+AL +
Sbjct: 333 RDNNIRYVALNML 345
>02_05_1134 -
34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 67.7 bits (158), Expect = 8e-12
Identities = 27/115 (23%), Positives = 72/115 (62%)
Frame = +1
Query: 247 INVHLATSEFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLA 426
+N+ + +AV++H+ ++ +K + D S+R++A++L++ + + TN + + +E++
Sbjct: 349 LNMLMRAITVDTQAVQRHRTTILECVK-DADASIRKRALELVFLLVNDTNVKPLTKELVD 407
Query: 427 YLETADYSIREEMVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
YL++AD +E++ K+ + EK++ + L D + + +AG++V ++V + ++
Sbjct: 408 YLDSADPDFKEDLTAKICSIVEKFSQEKLWYLDQMFKVLSLAGNHVKDDVWHALV 462
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/57 (42%), Positives = 37/57 (64%)
Frame = +2
Query: 83 SKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACNQLGQFLSNRETNLRYLALESM 253
+K + NA NA+L+E + I+ ++ L V A N LG+FLSNR+ N+RY+AL +
Sbjct: 296 TKNESNKNAANAILYECVQTIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNML 352
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +1
Query: 289 VKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYL-ETADYSIREEM 465
+ + ++ ++ + D +++++ +LLY M TN E IV M+ Y+ D+ + E+
Sbjct: 359 IAEEHQLAVIDCLEDPDDTLKRKTFELLYKMTKSTNVEVIVDRMIEYMINITDHHYKTEI 418
Query: 466 VVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
+ LAE++A + + AGD V+ V + ++
Sbjct: 419 ASRCVELAEQFAPSNQWFIQTMNKVFEHAGDLVNIRVAHNLM 460
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 101 SNAKNAVLFEAISLIIHNDSEPNLLVRACNQLGQFLSNRETNLRYLALESM 253
SN NA+L+E I I +L A +FL + NL+Y+ ++++
Sbjct: 299 SNIGNAILYECICCISSIFPNAKMLDAAAETTSKFLKSDSHNLKYMGIDAL 349
>01_05_0766 - 25026487-25027224
Length = 245
Score = 34.3 bits (75), Expect = 0.093
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 26 GRLSECLETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIH 151
GR +C E+ + PP+S+K+ HS+++++V ++ + H
Sbjct: 154 GRTPDCFESDSLDSSSPPRSRKMHHSSSQSSVFHGSMDTVTH 195
>07_03_0928 -
22673127-22673579,22676103-22676326,22676412-22676532,
22676665-22676928,22677039-22677260
Length = 427
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 259 LATSEFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQE 417
++ EF H ++ + + VIL+ DV Q+AVD++ A ++ A + + E
Sbjct: 254 ISVPEFFHWSLTEKDQFVILASDGVWDVLSNQEAVDIVSASPSRSKAAKSLVE 306
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 403 EIVQEMLAYLETADYSIREEMVVKVAILAEKYATDSL 513
++++ + Y+ TA+ + E+M + +LAEKY +L
Sbjct: 119 DVLRAFVHYMYTAEALLDEQMASDLLVLAEKYEVKNL 155
>06_03_0107 +
16709543-16709640,16712555-16713408,16715051-16715193,
16715312-16715573,16715835-16716150,16716257-16716383,
16717088-16717149,16717291-16717374,16717438-16717494,
16717705-16717768,16718057-16718152
Length = 720
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 4 HERTWSSRTSFRMPRNNIQQSSRT 75
HE S S+RMPRN Q SS T
Sbjct: 230 HESYMSEDISYRMPRNTSQASSST 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,878,459
Number of Sequences: 37544
Number of extensions: 240261
Number of successful extensions: 540
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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