Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060303.seq
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0) 135 2e-32
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_8597| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_57812| Best HMM Match : CBF (HMM E-Value=2.8) 30 1.5
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 30 2.0
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_47737| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 29 4.7
SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 28 6.2
SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_19526| Best HMM Match : Pentaxin (HMM E-Value=1.7e-10) 28 8.3
>SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)
Length = 949
Score = 135 bits (327), Expect = 3e-32
Identities = 62/89 (69%), Positives = 75/89 (84%)
Frame = +2
Query: 11 EPGVRGRLSECLETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACN 190
+P + RL ECL+TI NKAQEPPKSKKVQHSNA+NAVLFEAI+LIIH DS+ +LL+R CN
Sbjct: 286 DPAISARLHECLDTILNKAQEPPKSKKVQHSNARNAVLFEAINLIIHMDSDQSLLIRGCN 345
Query: 191 QLGQFLSNRETNLRYLALESMFI*LHQNF 277
QLGQFL++RETNLRYLALE + + + F
Sbjct: 346 QLGQFLTHRETNLRYLALEGLCLMSNSEF 374
Score = 128 bits (309), Expect(2) = 2e-32
Identities = 65/82 (79%), Positives = 70/82 (85%)
Frame = +1
Query: 331 EKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETADYSIREEMVVKVAILAEKYATDS 510
E+DVSVRQ+AVDLLYAMCDK NAEEIV EML YLETADYSI+EEMV+KVAIL+EKYATD
Sbjct: 432 ERDVSVRQRAVDLLYAMCDKNNAEEIVSEMLEYLETADYSIKEEMVLKVAILSEKYATDY 491
Query: 511 LGMWDVIPNPIRIAGDYVSEEV 576
D I IRIAGDYVSEEV
Sbjct: 492 SWYVDTILTLIRIAGDYVSEEV 513
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 593 QIVINRDEVQAYAAKTVFGSITSP 664
QIVINRD++Q YAAKTVF ++ P
Sbjct: 527 QIVINRDDIQGYAAKTVFEALQHP 550
Score = 29.1 bits (62), Expect(2) = 2e-32
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 259 LATSEFSHEAVKKHQEIVILSMK 327
++ SEFS +AV+KHQE V+ ++K
Sbjct: 369 MSNSEFSVDAVRKHQETVMGALK 391
>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/98 (27%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Frame = +1
Query: 298 HQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETAD-YSIREEMVVK 474
H++I+I + +KD S+R +A+DL+ M K N +I+++++ +++ AD + R+E++ K
Sbjct: 210 HRDIIIHCLD-DKDESIRLRALDLVVGMVSKKNIMDIIKKLMIHIDKADSQNYRDELLSK 268
Query: 475 VAILAE----KYATDSLGMWDVIPNPIRIAGDYVSEEV 576
+ ++ +Y T+ DV+ RI G ++V
Sbjct: 269 IIMICSQGDYQYVTNFEWYVDVLIQLTRIEGTRYGKQV 306
>SB_8597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 176 VRACNQLGQFLSNRETNLRYLALESM 253
V A N LG+FL N + N+RY+AL ++
Sbjct: 186 VLAINILGRFLLNNDKNIRYVALNTL 211
>SB_57812| Best HMM Match : CBF (HMM E-Value=2.8)
Length = 262
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 393 SLITHCIQKIYSLLPDRNIFFHFH*EDYYFLMLFYCFMRKF 271
S I ++K Y LLP R + HF E YYF +L ++ +
Sbjct: 80 SEIVKVLEKAYCLLPCR-VLLHFDFEPYYFTLLGLSYLLSY 119
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 262 ATSEFSHEAVKKHQEIVILSMKME---KDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYL 432
AT EF+ E+VKK + ++ KD ++ + K + + + E++ +
Sbjct: 1023 ATKEFAEESVKKVCAVYKFALNSSSDFKDFGENMESQSIAIMKTVKGDVQNALDEIMNFT 1082
Query: 433 ETADYSIREEMVVKVAILAEKYATDSLG 516
T D S+ +E+ + + +DSLG
Sbjct: 1083 ITVD-SLIDEIEKNFTVATRGFVSDSLG 1109
>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 83 SKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACNQLGQFLSNRETNLRYLALESMFI 259
SKK Q K A+LF A+ ++ + P LVR + LG + + Y+ + FI
Sbjct: 295 SKKAQSREWKAAILFTAMFVVFSSCWLPYFLVRIQHNLGNEMFEMTKLMEYIIIYLRFI 353
>SB_47737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 606 FITIWNYSVXNFF*DIITSNSYRIRNYIPHTK*ICSILFC*YSNFY 469
++T+W V DI SN + I++Y + + S LF YSN +
Sbjct: 13 YVTLWILPVMFCICDIADSNKFLIQSYAYNKVSLTSSLFTLYSNVF 58
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 28.7 bits (61), Expect = 4.7
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Frame = +1
Query: 262 ATSEFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDK---TNAEEIVQ-EMLAY 429
A + S +K HQE+ ++ EK+ SVR + + A K N E++VQ ++ +
Sbjct: 419 AAKKLSRAVMKHHQELRSKEVRAEKEESVRLKKIASSIAKEVKQFWANVEKVVQYKVQSR 478
Query: 430 LETADYSIREEMVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVS 567
LE ++ + + EKY+ S + + P P G VS
Sbjct: 479 LEEKRKKALDDQLNFIVDQTEKYS--SWLVESLKPQPSSAPGSVVS 522
>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 250 NVHLATSEFSHEAVKKHQEIVILSMKMEK---DVSVRQQAVDLLYAMCDKTNAEEIVQEM 420
N HLA S FS V+ + L + E+ D +R + +A C+ TNA I E
Sbjct: 44 NYHLAKSTFSIRNVEFLFAVRTLPTREERITADSKLRTSFETIAWATCESTNASTIKDEE 103
Query: 421 LAYLETADY 447
A+ E +
Sbjct: 104 NAHGEDKSF 112
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 385 DKTNAEEIVQEMLAYLETADYSIREEMVVKVAILAEKYATDSLGMWDVIPNPIRIAG 555
DK E+ VQ +L L+T +R + A + D W +IP P+R+ G
Sbjct: 2 DKKVTEQQVQAVLG-LDTDGSQVRNHQLSNAIASAVNHVLDGYD-WSLIPLPVRVNG 56
>SB_52549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 606 FITIWNYSVXNFF*DIITSNSYRIRNYIPHTK*ICSILFC*YSNFY 469
++T+W + DI SN + I++Y + + S LF YSN +
Sbjct: 83 YVTLWILPMMFCICDIADSNKFLIQSYAYNKVSLTSSLFTLYSNVF 128
>SB_19526| Best HMM Match : Pentaxin (HMM E-Value=1.7e-10)
Length = 274
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 606 FITIWNYSVXNFF*DIITSNSYRIRNYIPHTK*ICSILFC*YSNFY 469
++T+W + DI SN++ I++Y + + S LF YSN +
Sbjct: 13 YVTLWILPMMFCICDIADSNNFLIQSYAYNKVSLTSSLFTLYSNAF 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,223
Number of Sequences: 59808
Number of extensions: 299263
Number of successful extensions: 623
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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