Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060303.seq
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha ... 173 1e-43
AL132876-8|CAD21660.1| 829|Caenorhabditis elegans Hypothetical ... 75 4e-14
AF016671-6|AAK73904.1| 979|Caenorhabditis elegans Adaptin or ad... 49 4e-06
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad... 49 4e-06
Z67884-1|CAA91807.1| 347|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z75553-3|CAA99948.1| 407|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z30662-10|CAI58651.1| 409|Caenorhabditis elegans Hypothetical p... 28 5.5
Z30662-9|CAA83138.2| 451|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF125971-4|AAD14766.1| 381|Caenorhabditis elegans Hypothetical ... 28 5.5
AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical ... 28 7.3
>U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha
chain (clathrinassociated complex) protein 2 protein.
Length = 925
Score = 173 bits (421), Expect = 1e-43
Identities = 87/111 (78%), Positives = 97/111 (87%)
Frame = +1
Query: 259 LATSEFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLET 438
LATSEFSH+AVKKHQ+ +I S+K E+DVSVRQ+AVDLLYAMCD++NA +IV EMLAYLET
Sbjct: 355 LATSEFSHDAVKKHQDTIINSLKTERDVSVRQRAVDLLYAMCDRSNANQIVAEMLAYLET 414
Query: 439 ADYSIREEMVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
ADYSIREEMV+KVAILAEKYATD DVI IRIAGDYVSEEV YRVI
Sbjct: 415 ADYSIREEMVLKVAILAEKYATDYTWYVDVILKLIRIAGDYVSEEVWYRVI 465
Score = 136 bits (329), Expect = 1e-32
Identities = 66/81 (81%), Positives = 71/81 (87%)
Frame = +2
Query: 11 EPGVRGRLSECLETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACN 190
+P + RL ECLE I NKAQ+ PKSKKVQHSNAKNAVLFEAI+LIIH DSEP LLVRACN
Sbjct: 272 DPSNKARLLECLEGILNKAQDAPKSKKVQHSNAKNAVLFEAIALIIHMDSEPQLLVRACN 331
Query: 191 QLGQFLSNRETNLRYLALESM 253
QLG FLS+RETNLRYLALESM
Sbjct: 332 QLGTFLSHRETNLRYLALESM 352
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +2
Query: 593 QIVINRDEVQAYAAKTVFGSITSP 664
QIV+NR++VQ YAAKTVF ++ P
Sbjct: 466 QIVVNREDVQGYAAKTVFEALQRP 489
>AL132876-8|CAD21660.1| 829|Caenorhabditis elegans Hypothetical
protein Y105E8A.9 protein.
Length = 829
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/110 (31%), Positives = 69/110 (62%)
Frame = +1
Query: 247 INVHLATSEFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLA 426
+N L T ++AV++H+ +V+ +K + D+S+R++A++L +A+ ++TN + +E+L
Sbjct: 351 LNTLLKTVHVDYQAVQRHRNVVVECLK-DPDISIRKRAMELCFALMNRTNIAIMTKEVLI 409
Query: 427 YLETADYSIREEMVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEV 576
+LETAD + E ++ I E+Y+ + D + +R+AG YV +EV
Sbjct: 410 FLETADAEFKSECASRMYIATERYSPNHEWHLDTMITVLRLAGKYVPDEV 459
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +2
Query: 104 NAKNAVLFEAISLIIHNDSEPNLLVRACNQLGQFLSNRETNLRYLALESMFI*LHQNF 277
N NA+L+E + I+ SE L + A N LG+FL N + N+RY+AL ++ +H ++
Sbjct: 305 NVGNAILYETVLTIMEIKSESGLRILAVNILGRFLLNTDKNIRYVALNTLLKTVHVDY 362
>AF016671-6|AAK73904.1| 979|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform b protein.
Length = 979
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/66 (36%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 EAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETADYS-IRE 459
+AV+ H++IV+ + +KD S+R +++DLLY M K N EIV++++ ++E A+ S R+
Sbjct: 63 KAVQAHKDIVLRCLD-DKDESIRIRSLDLLYGMVSKKNIVEIVKKLMEHVEAAEGSHYRD 121
Query: 460 EMVVKV 477
E++ ++
Sbjct: 122 ELLSRI 127
>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform a protein.
Length = 1251
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/66 (36%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 EAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETADYS-IRE 459
+AV+ H++IV+ + +KD S+R +++DLLY M K N EIV++++ ++E A+ S R+
Sbjct: 335 KAVQAHKDIVLRCLD-DKDESIRIRSLDLLYGMVSKKNIVEIVKKLMEHVEAAEGSHYRD 393
Query: 460 EMVVKV 477
E++ ++
Sbjct: 394 ELLSRI 399
>Z67884-1|CAA91807.1| 347|Caenorhabditis elegans Hypothetical
protein T14G8.2 protein.
Length = 347
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 292 KKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETADYSIREE 462
K H++IV+ + ++ +R + +LY + N E I Q L +L+ + Y +R++
Sbjct: 103 KNHRDIVVQLVHFFQNFFMRAKLETILYIATEDRNEERISQMDLKFLKESQYIVRDD 159
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical protein
T21C9.2 protein.
Length = 1058
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +1
Query: 412 QEMLAYLETADYSIRE---EMVVKVAILAEKYATDSLGMWD---VIPNP 540
+ +L Y + + R+ E+ K+ + Y T+ LGMWD VIP+P
Sbjct: 919 KSLLRYFKQVESEYRDHVNEIAAKLISVIAHYTTNCLGMWDVKGVIPSP 967
>Z75553-3|CAA99948.1| 407|Caenorhabditis elegans Hypothetical
protein ZC443.3 protein.
Length = 407
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 411 YNFFCISLITHCIQKIYSLLPDRNIFFH 328
+N C+ IT I + +S++PD+N FFH
Sbjct: 58 HNDLCMMSITADINR-FSMIPDKNTFFH 84
>Z30662-10|CAI58651.1| 409|Caenorhabditis elegans Hypothetical
protein T16H12.5b protein.
Length = 409
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 403 EIVQEMLAYLETADYSIREEMVVKVAILAEKYATDSL 513
E+++E+L Y+ T E+M + A+KY D L
Sbjct: 278 EVMRELLVYMYTGQTKYIEQMAQSLIAAADKYQLDRL 314
>Z30662-9|CAA83138.2| 451|Caenorhabditis elegans Hypothetical
protein T16H12.5a protein.
Length = 451
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 403 EIVQEMLAYLETADYSIREEMVVKVAILAEKYATDSL 513
E+++E+L Y+ T E+M + A+KY D L
Sbjct: 320 EVMRELLVYMYTGQTKYIEQMAQSLIAAADKYQLDRL 356
>AF125971-4|AAD14766.1| 381|Caenorhabditis elegans Hypothetical
protein Y4C6B.3 protein.
Length = 381
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 542 IGLGITSHIPSESVAYFSANIATFTTISSLI 450
IG+ I+ P + A F A + +FT ISS+I
Sbjct: 91 IGIIISKWAPLDETAVFIATLTSFTAISSII 121
>AF125971-2|AAN73291.1| 458|Caenorhabditis elegans Hypothetical
protein Y4C6B.4a protein.
Length = 458
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 542 IGLGITSHIPSESVAYFSANIATFTTISSLI 450
IG+ I+ P + A F A + +FT+I+S+I
Sbjct: 137 IGIVISKWAPLDETAIFIATLTSFTSIASII 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,578,480
Number of Sequences: 27780
Number of extensions: 241622
Number of successful extensions: 600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -