Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060303.seq
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22780.1 68418.m02663 adaptin family protein similar to SP|P1... 111 6e-25
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1... 111 6e-25
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1... 111 6e-25
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1... 111 6e-25
At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm... 66 2e-11
At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O... 66 2e-11
At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O... 66 2e-11
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP... 43 2e-04
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 29 2.9
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 29 2.9
At4g32160.1 68417.m04574 phox (PX) domain-containing protein con... 29 3.9
At4g28400.1 68417.m04065 protein phosphatase 2C, putative / PP2C... 27 8.9
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ... 27 8.9
>At5g22780.1 68418.m02663 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1013
Score = 111 bits (266), Expect = 6e-25
Identities = 52/103 (50%), Positives = 79/103 (76%)
Frame = +1
Query: 283 EAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETADYSIREE 462
+ +KKHQ +I S+K + D+S+R++A+DLLY MCD +NA++IV+E+L YL TA++S+REE
Sbjct: 354 DIIKKHQSQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAEFSMREE 412
Query: 463 MVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
+ +K AILAEK+A D DVI I AGD+VS+++ +RV+
Sbjct: 413 LSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVV 455
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/81 (41%), Positives = 49/81 (60%)
Frame = +2
Query: 11 EPGVRGRLSECLETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACN 190
+P R L E L+ I K V +NA +AVLFEA+SL++H D+E ++ +
Sbjct: 266 DPSTRKALFEVLQRILMGTDVV---KNVNKNNASHAVLFEALSLVMHLDAEKEMMSQCVA 322
Query: 191 QLGQFLSNRETNLRYLALESM 253
LG+F+S RE N+RYL LE+M
Sbjct: 323 LLGKFISVREPNIRYLGLENM 343
>At5g22770.3 68418.m02661 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 111 bits (266), Expect = 6e-25
Identities = 52/103 (50%), Positives = 79/103 (76%)
Frame = +1
Query: 283 EAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETADYSIREE 462
+ +KKHQ +I S+K + D+S+R++A+DLLY MCD +NA++IV+E+L YL TA++S+REE
Sbjct: 354 DIIKKHQSQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAEFSMREE 412
Query: 463 MVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
+ +K AILAEK+A D DVI I AGD+VS+++ +RV+
Sbjct: 413 LSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVV 455
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/81 (41%), Positives = 49/81 (60%)
Frame = +2
Query: 11 EPGVRGRLSECLETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACN 190
+P R L E L+ I K V +NA +AVLFEA+SL++H D+E ++ +
Sbjct: 266 DPSTRKALFEVLQRILMGTDVV---KNVNKNNASHAVLFEALSLVMHLDAEKEMMSQCVA 322
Query: 191 QLGQFLSNRETNLRYLALESM 253
LG+F+S RE N+RYL LE+M
Sbjct: 323 LLGKFISVREPNIRYLGLENM 343
>At5g22770.2 68418.m02660 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 111 bits (266), Expect = 6e-25
Identities = 52/103 (50%), Positives = 79/103 (76%)
Frame = +1
Query: 283 EAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETADYSIREE 462
+ +KKHQ +I S+K + D+S+R++A+DLLY MCD +NA++IV+E+L YL TA++S+REE
Sbjct: 354 DIIKKHQSQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAEFSMREE 412
Query: 463 MVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
+ +K AILAEK+A D DVI I AGD+VS+++ +RV+
Sbjct: 413 LSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVV 455
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/81 (41%), Positives = 49/81 (60%)
Frame = +2
Query: 11 EPGVRGRLSECLETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACN 190
+P R L E L+ I K V +NA +AVLFEA+SL++H D+E ++ +
Sbjct: 266 DPSTRKALFEVLQRILMGTDVV---KNVNKNNASHAVLFEALSLVMHLDAEKEMMSQCVA 322
Query: 191 QLGQFLSNRETNLRYLALESM 253
LG+F+S RE N+RYL LE+M
Sbjct: 323 LLGKFISVREPNIRYLGLENM 343
>At5g22770.1 68418.m02659 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 111 bits (266), Expect = 6e-25
Identities = 52/103 (50%), Positives = 79/103 (76%)
Frame = +1
Query: 283 EAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETADYSIREE 462
+ +KKHQ +I S+K + D+S+R++A+DLLY MCD +NA++IV+E+L YL TA++S+REE
Sbjct: 354 DIIKKHQSQIITSLK-DPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAEFSMREE 412
Query: 463 MVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
+ +K AILAEK+A D DVI I AGD+VS+++ +RV+
Sbjct: 413 LSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVV 455
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/81 (41%), Positives = 49/81 (60%)
Frame = +2
Query: 11 EPGVRGRLSECLETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACN 190
+P R L E L+ I K V +NA +AVLFEA+SL++H D+E ++ +
Sbjct: 266 DPSTRKALFEVLQRILMGTDVV---KNVNKNNASHAVLFEALSLVMHLDAEKEMMSQCVA 322
Query: 191 QLGQFLSNRETNLRYLALESM 253
LG+F+S RE N+RYL LE+M
Sbjct: 323 LLGKFISVREPNIRYLGLENM 343
>At1g60070.1 68414.m06767 gamma-adaptin, putative similar to
gamma-adaptin GI:2765190 from [Homo sapiens]; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 867
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/115 (23%), Positives = 69/115 (60%)
Frame = +1
Query: 247 INVHLATSEFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLA 426
+N+ + + +AV++H+ ++ +K + D S++++A++L+Y + ++ N + + +E++
Sbjct: 333 LNMLMRSLTVDSQAVQRHRATILECVK-DSDASIQKRALELIYLLVNENNVKPLAKELIE 391
Query: 427 YLETADYSIREEMVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
YLE ++ + ++ K+ + EK+A + + D + + AG YV E+V + +I
Sbjct: 392 YLEVSEQDFKGDLTAKICSIVEKFAPEKIWYIDQMLKVLSEAGTYVKEDVWHALI 446
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = +2
Query: 35 SECLETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACNQLGQFLSN 214
S+C+ I + +S K NA NA+L+E + I+ + L V A N LG+FLSN
Sbjct: 268 SDCMNDILAQVASKTESNK----NAGNAILYECVQTIMSIEENGGLRVLAINILGKFLSN 323
Query: 215 RETNLRYLALESM 253
R+ N+RY+AL +
Sbjct: 324 RDNNIRYVALNML 336
>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to
SP|O43747 Adapter-related protein complex 1 gamma 1
subunit (Gamma-adaptin) (Clathrin assembly protein
complex 1 gamma-1 large chain) {Homo sapiens}; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 876
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/115 (25%), Positives = 68/115 (59%)
Frame = +1
Query: 247 INVHLATSEFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLA 426
+N+ + F +AV++H+ + IL + D S+R++A++L+ + ++ N ++ +E++
Sbjct: 333 LNMLMKAITFDDQAVQRHR-VTILECVKDPDASIRKRALELVTLLVNENNVTQLTKELID 391
Query: 427 YLETADYSIREEMVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
YLE +D +E++ K+ + EK++ + L D + + AG +V ++V + +I
Sbjct: 392 YLEISDEDFKEDLSAKICFIVEKFSPEKLWYIDQMLKVLCEAGKFVKDDVWHALI 446
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +2
Query: 83 SKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACNQLGQFLSNRETNLRYLALESM 253
+K + NA NAVL+E + I+ + +L V A N LG+FLSNR+ N+RY+AL +
Sbjct: 280 TKTESNKNAGNAVLYECVETIMAIEDTNSLRVLAINILGRFLSNRDNNIRYVALNML 336
>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to
SP|O43747 Adapter-related protein complex 1 gamma 1
subunit (Gamma-adaptin) (Clathrin assembly protein
complex 1 gamma-1 large chain) {Homo sapiens}; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 876
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/115 (25%), Positives = 68/115 (59%)
Frame = +1
Query: 247 INVHLATSEFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLA 426
+N+ + F +AV++H+ + IL + D S+R++A++L+ + ++ N ++ +E++
Sbjct: 333 LNMLMKAITFDDQAVQRHR-VTILECVKDPDASIRKRALELVTLLVNENNVTQLTKELID 391
Query: 427 YLETADYSIREEMVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
YLE +D +E++ K+ + EK++ + L D + + AG +V ++V + +I
Sbjct: 392 YLEISDEDFKEDLSAKICFIVEKFSPEKLWYIDQMLKVLCEAGKFVKDDVWHALI 446
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/57 (43%), Positives = 37/57 (64%)
Frame = +2
Query: 83 SKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVRACNQLGQFLSNRETNLRYLALESM 253
+K + NA NAVL+E + I+ + +L V A N LG+FLSNR+ N+RY+AL +
Sbjct: 280 TKTESNKNAGNAVLYECVETIMAIEDTNSLRVLAINILGRFLSNRDNNIRYVALNML 336
>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
epsilon subunit) {Homo sapiens}; contains Pfam profile:
PF01602 Adaptin N terminal region
Length = 938
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Frame = +1
Query: 271 EFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETA-DY 447
+ S + ++HQ VI ++ + D +++++ +LLY M +N E IV M+ Y+ + D
Sbjct: 354 KISPDIAEQHQLAVIDCLE-DPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISINDN 412
Query: 448 SIREEMVVKVAILAEKYATDSLGMWDVIPNPIRIAGDYVSEEVXYRVI 591
+ E+ + LAE++A + ++ AGD V+ +V + ++
Sbjct: 413 HYKTEIASRCVELAEQFAPSNQWFIQIMNKVFEHAGDLVNIKVAHNLM 460
Score = 34.3 bits (75), Expect = 0.078
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 101 SNAKNAVLFEAISLIIHNDSEPNLLVRACNQLGQFLSNRETNLRYLALESM 253
+N NA+L+E I I P LL A + + +FL + NL+Y+ ++ +
Sbjct: 299 TNIGNAILYECIRCISCILPNPKLLEAAADAISKFLKSDSHNLKYMGIDGL 349
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +2
Query: 44 LETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVR-ACNQLGQFLSNRE 220
+E K P + ++ + AK+ V FE + ++ + S+ V+ A ++ +FL +
Sbjct: 251 IEPRLGKKVAEPICEHMRRTVAKSLV-FECVRTVVSSLSDNEAAVKLAVAKIREFLVEDD 309
Query: 221 TNLRYLALESMFI 259
NL+YL L ++ I
Sbjct: 310 PNLKYLGLNALSI 322
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +2
Query: 44 LETIFNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHNDSEPNLLVR-ACNQLGQFLSNRE 220
+E K P + ++ + AK+ V FE + ++ + S+ V+ A ++ +FL +
Sbjct: 251 IEPRLGKKVAEPICEHMRRTVAKSLV-FECVRTVVSSLSDNEAAVKLAVAKIREFLVEDD 309
Query: 221 TNLRYLALESMFI 259
NL+YL L ++ I
Sbjct: 310 PNLKYLGLNALSI 322
>At4g32160.1 68417.m04574 phox (PX) domain-containing protein
contains Pfam profile PF00787: PX domain
Length = 723
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +1
Query: 364 DLLYAMCDKTNAEEIVQEMLAYLETADYSIREEMVVKVAILAEKYATDSLGM 519
+L +++ DKTNAE+++QE LE + R++++ IL ++ +L +
Sbjct: 555 ELTHSLTDKTNAEKLLQEERKLLENT-VAARKKLLSDCRILHDRLKEYNLNL 605
>At4g28400.1 68417.m04065 protein phosphatase 2C, putative / PP2C,
putative protein phosphatase 2C-fission yeast,
PIR2:S54297
Length = 283
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 247 INVHLATS-EFSHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCD-KTNAEEIVQEM 420
+ +HL++ + +H+ + H E ++ + V Q+AVD + ++ D A+ +++E
Sbjct: 207 LKLHLSSEPDITHQTIDDHTEFILFASDGIWKVLSNQEAVDAIKSIKDPHAAAKHLIEEA 266
Query: 421 LAYLETADYS 450
++ D S
Sbjct: 267 ISRKSKDDIS 276
>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
protein prolamin box binding factor, Zea mays,
PID:g2393775
Length = 194
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +1
Query: 277 SHEAVKKHQEIVILSMKMEKDVSVRQQAVDLLYAMCDKTNAEEIVQEMLAYLETADYSIR 456
+H+ KK QE + +S+ DVS+ D L + TN+ I + L+ + S +
Sbjct: 95 NHQPFKKFQENISVSVSSSSDVSIVGNHFDDLSELHGITNSTPIRSFTMDRLDFGEESFQ 154
Query: 457 EEM 465
+++
Sbjct: 155 QDL 157
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,475,046
Number of Sequences: 28952
Number of extensions: 209545
Number of successful extensions: 515
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -