Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060301.seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    27   2.6  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    26   5.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   7.8  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   7.8  

>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/46 (41%), Positives = 20/46 (43%)
 Frame = -1

Query: 629 FVLFSTHLFIRPAAAAPLSKLTFSKSASNTSTASFLSFGSTHSHPP 492
           F  FST L I        SK  F K  S T + SFLSF    S  P
Sbjct: 57  FSSFSTTLRILRDFIIAASKCEFEKIWSTTFSISFLSFNFKSSESP 102


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 669 IEAVFTQEIFNAFICFIFNPFVY*AGGCGSVIEVNFFKICIEYLDSVLLKF 517
           ++ +   EI  A I FI +     A  CG  ++ NF  + I Y+D VL KF
Sbjct: 10  LQIILCTEIDEACIQFIKSQIEGIARACGPRMQANFEGVLIPYVD-VLGKF 59


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 231 LSSAITKFLQSFAMNWIKRRMLYHHHCQQNTCWR 332
           LS   +    SF  +W+ R +LYH   + +  WR
Sbjct: 111 LSYVYSPLFHSF-QDWVVRSLLYHPQLEYDYVWR 143


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 593 AAAAPLSKLTFSKSASNTSTASFLSFG 513
           ++ AP   L  S +ASNTS  S  SFG
Sbjct: 45  SSTAPSGGLFGSNNASNTSAPSTFSFG 71


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 491 KEGDYESTQNLRRTLSRYSMQILKKLTSITEPQPPA 598
           KE D ++ Q +R  L        +K++   EP PP+
Sbjct: 202 KEEDIKTIQEIRPNLKLIKFADFEKMSPPVEPDPPS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,550
Number of Sequences: 5004
Number of extensions: 52494
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)