Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060301.seq
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 36 0.041
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 34 0.094
11_02_0012 - 7346282-7347136,7347234-7347593 34 0.12
01_06_0824 - 32243495-32244319,32244449-32244859 34 0.12
11_02_0014 - 7352619-7352918,7353173-7353418 32 0.50
11_02_0011 - 7337618-7338496,7338596-7338991 32 0.50
05_06_0044 - 25150322-25151260 31 0.87
03_05_0294 + 22855503-22855946,22856346-22856399 31 1.2
01_06_0271 - 28055367-28055402,28055503-28055622,28055710-280558... 31 1.2
01_06_0120 + 26622285-26622433,26623156-26623219,26623310-266233... 30 1.5
11_01_0750 - 6315126-6315896,6316371-6316784 30 2.0
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 29 2.7
06_01_0024 + 233101-233189,233259-233340,233430-233493,233636-23... 28 6.2
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503... 28 6.2
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 28 6.2
01_01_1152 + 9170628-9171899 28 6.2
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 28 8.1
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786 28 8.1
02_04_0632 + 24614659-24615528,24615636-24616133 28 8.1
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 35.5 bits (78), Expect = 0.041
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 583 AAAAGLINKWVENKTNERIKDLLSEDSLDSFTRLVL 690
A A +N WVE T+ IK++L S+D TRLVL
Sbjct: 211 AEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVL 246
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 583 AAAAGLINKWVENKTNERIKDLLSEDSLDSFTRLVL 690
A G +N WV+ T+ IK++ + S++ T+LVL
Sbjct: 463 AEVLGQVNSWVDRVTSGLIKNIATPRSINHNTKLVL 498
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 287 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 394
+NV SPLS L+L+ G ++L ++LG P
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGP 70
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 34.3 bits (75), Expect = 0.094
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 583 AAAAGLINKWVENKTNERIKDLLSEDSLDSFTRLVL 690
A A +N WV+ T+ IK++L S+D TRLVL
Sbjct: 3 AEVASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVL 38
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 601 INKWVENKTNERIKDLLSEDSLDSFTRLVLV 693
INKWV TN+ I+++L + S+ T LVLV
Sbjct: 128 INKWVSKATNKLIREILPDGSVHGGTALVLV 158
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 278 DKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTI 409
+ +NVV SP+S LAL+ G +EL+ LG D +
Sbjct: 28 NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDL 71
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 544 FDADFEKVNF-DNGAAAAGLINKWVENKTNERIKDLLSEDSLDSFTRLVL 690
+ A+ V+F D A IN+W E+ T RIKD L +D++D T VL
Sbjct: 125 YRAEARPVSFRDKLEEARREINEWFESATAGRIKDFLPKDAVDRATPAVL 174
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 601 INKWVENKTNERIKDLLSEDSLDSFTRLVLV 693
IN+WV TN+ I ++L + S+ T LVLV
Sbjct: 90 INEWVSKATNKLIPEILPDGSVHRLTTLVLV 120
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 601 INKWVENKTNERIKDLLSEDSLDSFTRLVLV 693
INKWV TN+ I ++L + S+ T LVLV
Sbjct: 140 INKWVSKATNKLIPEILPDGSVHVDTALVLV 170
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 275 LDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDTI 409
+ KN+V SP S LAL+ G +ELL LG D +
Sbjct: 27 VSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDL 71
>05_06_0044 - 25150322-25151260
Length = 312
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 508 VDPKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSLD 669
++P A VF A N AAA IN+W ++T +KD+LS +S+D
Sbjct: 11 LNPAFADTAASVFKAAVRSAG--NPAAARAEINEWFSSQTGGFVKDILS-NSID 61
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 290 NVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIPDDDT 406
NV SPLS L+L+ G ++L++ LG+P T
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGT 83
>01_06_0271 -
28055367-28055402,28055503-28055622,28055710-28055892,
28056006-28056145,28056347-28056595,28056706-28056823,
28056924-28056999,28057096-28057162,28057282-28057369,
28057506-28057616,28058127-28058221,28058305-28058344,
28058736-28058812,28058978-28059026,28059464-28059520,
28059624-28059713,28059833-28059896,28060076-28060245
Length = 609
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 230 FILCNHQVPAKFCNELDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGI 391
FILC+ +V F E + + + P + +YL +++ G +P +E + G+
Sbjct: 150 FILCHAEVEIAFIEEKKIGEVLKTFPNATKYLKTIVSFGKVNPEQKEKVEQNGV 203
>01_06_0120 +
26622285-26622433,26623156-26623219,26623310-26623399,
26623588-26623644,26623832-26623880,26624320-26624396,
26624918-26624957,26625037-26625131,26625525-26625689,
26625777-26625887,26625971-26626058,26626715-26626781,
26626955-26627063,26627155-26627272,26628345-26628590,
26628956-26629095,26629262-26629444,26629560-26629679,
26629932-26629967
Length = 667
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 230 FILCNHQVPAKFCNELDKKKNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGI 391
FILC+ +V F E ++ + P SAE+L +++ G +E + G+
Sbjct: 143 FILCHAEVEIAFTEEKKIEQIFKTFPKSAEFLKTIVSFGKVTQEQKENASKYGL 196
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 508 VDPKLKKDAVEVFDADFEKVNFDNGAA-AAGLINKWVENKTNERIKDLLSEDSLDSFTRL 684
+ P+ A V+ + +K +F N A IN WV++ T + LL ++D T L
Sbjct: 114 LSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLLPAGTIDQNTGL 173
Query: 685 VL 690
VL
Sbjct: 174 VL 175
>02_05_0061 +
25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 626 VLFSTHLFIRPAAAAPLSKLTFSKSASNTSTASFLSFGSTHSHPP*CIFCW 474
+L ST L PAA + + S +A++ A+ LSF S S P + W
Sbjct: 7 LLCSTLLLYSPAAVCTVGSSSSSTNATDKQAAALLSFRSMVSDPSGALTWW 57
>06_01_0024 +
233101-233189,233259-233340,233430-233493,233636-233826,
233901-233978,234133-234207,234436-234506,234710-234826,
234915-235016,235196-235316,235451-235537,235708-235794,
236237-236338,236629-236692,237554-237580,237581-237636,
238185-238256,238540-238622,238953-239001,239335-239397,
239633-239722,239823-239909,240072-240146,240222-240280,
240511-240604,240681-240899,240998-241092,241504-241594,
241663-241767,241847-241885,242263-242352,242538-242639,
242837-242918,243075-243160,243264-243362
Length = 1030
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 338 LSTPASILLTMVMIQHSSFYPVHCKTLQELGDC 240
L+ P +L+T VM +H ++PV KT+ L C
Sbjct: 610 LALPKDVLIT-VMQKHQKYFPVTSKTMGNLLPC 641
>03_05_0167 - 21448714-21448846,21449748-21449870,21450024-21450302,
21450389-21450672,21450737-21450964,21452937-21453110,
21453198-21453732,21453779-21453840,21453908-21454231,
21454664-21455093,21457033-21457268,21457355-21457414,
21457495-21457628,21457884-21458010,21458239-21458337,
21458414-21458513,21458601-21458671,21459101-21459172,
21459656-21459787,21460512-21460670
Length = 1253
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +2
Query: 311 SAEYLLALITLGTTDPAHEELLTSLGIPDDDT--IRXXXXXXXXXXXXIKGVTFNVANKI 484
+A Y L + G A+ +T LG+ D+ + K V+ + I
Sbjct: 1077 NARYYLFISHTGYGGVAYAMAITCLGLGADEKFIMEQTAETHFISTSLTKSVSIKTSADI 1136
Query: 485 YIKEGDYESTQNLRRTL 535
+K+GDY NL R L
Sbjct: 1137 ALKQGDYRDILNLTRVL 1153
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -3
Query: 456 PFIDF--NFDDTAENDERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNG 304
PF+ F +DD +++R V+S I +SCAGSV+ + ++ +K D G
Sbjct: 84 PFLYFMVQYDDILFHEKRRVTSVTIDFTFGLNSCAGSVI-RDLHIAKQEEDIG 135
>01_01_1152 + 9170628-9171899
Length = 423
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 287 KNVVSSPLSAEYLLALITLGTTDPAHEELLTSLGIP 394
+N + SPLS LAL+ G ELL LG P
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLGSP 94
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 517 KLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSLDSFT 678
K +DA+ V D V+ ++ AA GL+ + K + DL+++ ++D+ T
Sbjct: 128 KALEDALAVLDKIAMHVDVNDRAAMLGLVKSSIGTKFTGQFGDLIADLAIDATT 181
>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
Length = 290
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 602 IRPAAAAPLSKLTFSKSASNTSTASFLSFGSTHSHPP 492
+ P A+ P ++L+ S S+ +T S LS TH+ PP
Sbjct: 24 LAPPASTP-ARLSPSSSSRRPATPSLLSLRRTHAAPP 59
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -3
Query: 387 PRLVNSSSCAGSVVPKVINASKYSA----DNGDD 298
P L+ +G+ PK+ NAS Y+A DNGDD
Sbjct: 75 PSLMGFVLISGTQFPKINNASAYAAADPGDNGDD 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,873
Number of Sequences: 37544
Number of extensions: 300551
Number of successful extensions: 753
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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