Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060301.seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      37   0.018
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      36   0.024
SB_32530| Best HMM Match : PSK_trans_fac (HMM E-Value=1.6)             30   1.6  
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               28   8.3  
SB_19852| Best HMM Match : SOUL (HMM E-Value=2.7)                      28   8.3  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 544 FDADFEKVNFDNGAAAAGL-INKWVENKTNERIKDLLSEDSLDSFTRLVLV 693
           +DAD   V++      A   +N+WVE +T ++I DL++    +  TRL LV
Sbjct: 76  YDADISLVDYKTDFEGARKHVNQWVEERTKKKICDLIAPGVFNMLTRLTLV 126


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 538 EVFDADFEKVNFDNGAAAAGL-INKWVENKTNERIKDLLSEDSLDSFTRLVLV 693
           E + ++  +V+F N A  A   +N WV  +T   IK+L+    ++S TRL++V
Sbjct: 79  EFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVINSLTRLIIV 131


>SB_32530| Best HMM Match : PSK_trans_fac (HMM E-Value=1.6)
          Length = 237

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -3

Query: 540 LDSVLLKFWVDS*SPSLMYILLATLNVTPFIDFNFDDTAENDERIVSSSGIP 385
           LD  LLK W DS  PS    LL     +P + F+     EN+E       +P
Sbjct: 45  LDEPLLKHWDDSLGPS----LLTAAADSPMLGFSRSHAIENEESFDDDDNVP 92


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 514  PKLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSLD 669
            PK+  D +   D   + V+ DNGA+A+G   K V + + E+IK + S +  D
Sbjct: 1072 PKVLPDGISKPDKVEQMVSDDNGASASG---KTVSDHSMEKIKGVNSGEGGD 1120


>SB_19852| Best HMM Match : SOUL (HMM E-Value=2.7)
          Length = 420

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 449 IKGVTFNVANKIYIKEGDYESTQNLRRTLSRYSMQI 556
           I+ +  N+ NKI   +  YES QN ++T   Y   I
Sbjct: 28  IRTIIVNIINKIINHDQYYESYQNYQKTYHNYKKTI 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,232,467
Number of Sequences: 59808
Number of extensions: 345884
Number of successful extensions: 731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)