Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060301.seq
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.69 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    25   0.91 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    25   0.91 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    25   0.91 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 8   SLHPTYIFSYLYNKGIFTINCKKRCYIEKTIFKSPV 115
           ++H    + Y YN   +  NCKK  Y    I + PV
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPV 124


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 8   SLHPTYIFSYLYNKGIFTINCKKRCYIEKTIFKSPV 115
           ++H    + Y YN   +  NCKK  Y    I + P+
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 8   SLHPTYIFSYLYNKGIFTINCKKRCYIEKTIFKSPV 115
           ++H    + Y YN   +  NCKK  Y    I + P+
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 8   SLHPTYIFSYLYNKGIFTINCKKRCYIEKTIFKSPV 115
           ++H    + Y YN   +  NCKK  Y    I + P+
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPI 124


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 230 FILCNHQVPAKFCNELDKKKNVVSSPLS 313
           F +C  ++ +K C+E+ K   V   P+S
Sbjct: 34  FTICVPEIYSKECDEMKKDSAVKGIPVS 61


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 230 FILCNHQVPAKFCNELDKKKNVVSSPLS 313
           F +C  ++ +K C+E+ K   V   P+S
Sbjct: 34  FTICVPEIYSKECDEMKKDSAVKGIPVS 61


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 230 FILCNHQVPAKFCNELDKKKNVVSSPLS 313
           F +C  ++ +K C+E+ K   V   P+S
Sbjct: 34  FTICVPEIYSKECDEMKKDSAVKGIPVS 61


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 667  RGCLHSRDL*CV 632
            R CLH RDL CV
Sbjct: 1096 RLCLHHRDLPCV 1107


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 630  ICFIFNPFVY*AGGCGSV 577
            ICF   P V  A GC +V
Sbjct: 1701 ICFTMRPVVSCASGCTAV 1718


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,434
Number of Sequences: 438
Number of extensions: 3412
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)