Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060300.seq
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   4.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   4.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   5.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.2  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 506 TPTLTVPSCTWRRLRRRNSSPTSPCRPWRRLRSVSKPCLVSR 631
           T  +T P   + +LRR +   TS   P+  L   S+P ++ R
Sbjct: 312 TLDITEPVKVFIQLRRPSDGATSEALPFELLPLDSEPGMLKR 353



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 274 QTA*QNTPTPQRAKYLGDPNSQDSVGTAADAAMPPVC 164
           +T  QN      ++   +PN  DS+   A++A+  +C
Sbjct: 510 ETFTQNLSLMDESEGRQEPNMTDSLTRLANSALDNIC 546


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 510 LHLPYLRVPGGVCVGGIHRRHRPVAHGGG*GPYPNHAWFREH 635
           +H  Y+    G  +   H  HRP   G    P+ NHA    H
Sbjct: 12  IHPGYMDGGAGAGLYEPHVAHRPGLQGLHHSPHLNHAMHPYH 53


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/52 (23%), Positives = 19/52 (36%)
 Frame = +2

Query: 461 YEVFKVAYAGMLDDETPTLTVPSCTWRRLRRRNSSPTSPCRPWRRLRSVSKP 616
           Y++     A +  DE P   VP+   +  +   S PT          +  KP
Sbjct: 376 YQILNAINAALKSDEIPPEPVPTPEPQPTQTTESEPTQASEQPTESSTTQKP 427


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 506 TPTLTVPSCTWRRLRRRNSSPTSPCRPWRRLRSVSKPCLVSRAP 637
           T T+ + +CT   L+   +SP    RP  +  S+S P  V   P
Sbjct: 247 TATVQLSTCTRTTLKNNRASPYPMQRP--KSASLSPPPHVYNPP 288


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 624 FREHPPRSVAEXGQERR 674
           ++EH  RS+ E G  RR
Sbjct: 573 YKEHIMRSITESGGRRR 589


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,169
Number of Sequences: 336
Number of extensions: 3304
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)