Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060300.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    33   0.003
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    33   0.003
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
 Frame = +2

Query: 260 LSCGLTXTAVVPLDLVKCRLQVX--------AEKYKNVVNGFKVSVREEGVRGLAKGWAP 415
           ++  ++ T V P++ VK  LQV          ++YK +++ F    +E+G     +G   
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 416 TFIXYSMQGLCKFGFYEVFKVAYAGMLDDETPTL 517
             I Y       F F + +K  + G +D  T  L
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
 Frame = +2

Query: 260 LSCGLTXTAVVPLDLVKCRLQVX--------AEKYKNVVNGFKVSVREEGVRGLAKGWAP 415
           ++  ++ T V P++ VK  LQV          ++YK +++ F    +E+G     +G   
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 416 TFIXYSMQGLCKFGFYEVFKVAYAGMLDDETPTL 517
             I Y       F F + +K  + G +D  T  L
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 492 CWTTRPLHLPYLRVPGGVCVGGIHRRHRP 578
           CW+ R     ++R+    C G + RR++P
Sbjct: 392 CWS-RDFRRAFVRILCACCPGRVRRRYQP 419


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +3

Query: 543 VCVGGIHRRHRPVAHGGG*GPYPNHAWFREHPPRSVAEXGQERRLR 680
           VC+    RRHRPV    G   Y NH         S +   + R +R
Sbjct: 105 VCMRKCPRRHRPVCASNG-KIYANHCELHRAACHSGSSLTKSRLMR 149


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 307 HQVEGHHGRXGQTA*QNTPTPQRAKYLGDP 218
           HQ + H+G   Q   Q     Q+++  GDP
Sbjct: 22  HQHQQHYGAAVQVPQQTQSVQQQSQQAGDP 51


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 556 PPTQTPPGTRRYGKCR 509
           PP QTPP  +  G+ R
Sbjct: 395 PPRQTPPSRKESGRRR 410


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 115 GPRNGEFRAASSNEEN 68
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,060
Number of Sequences: 438
Number of extensions: 4542
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)